Hs00280211_cn

• Gene Symbol: PADI3
• Assay Reference Genome Location: Chr.1:17270272 on build GRCh38
• Cytoband: 1p36.13

Target Gene Details

• Entrez Gene ID: 51702
• Gene Name: peptidyl arginine deiminase 3
• Gene Aliases: PAD3, PDI3
• Location: Chr.1:17249079-17284233 on Build GRCh38
• Assay Gene Location: Overlaps Intron 8 - Exon 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PADI3	NM_016233.2			NP_057317.2
	XM_011541571.2			XP_011539873.1
	XM_011541572.2			XP_011539874.1
	XM_017001463.1			XP_016856952.1
	AB026831.1			BAA85974.1
	BC041592.1			AAH41592.1
	BC109091.1			AAI09092.1
	BC109092.1			AAI09093.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv19e212	Chr.1:17264582 - 17293502 on Build GRCh38	Gain	PADI3 MIR3972
dgv128n100	Chr.1:17249833 - 17309505 on Build GRCh38	Gain	PADI3 MIR3972 PADI4
nsv834291	Chr.1:17204322 - 17350217 on Build GRCh38	Gain	PADI3 MIR3972 PADI1 PADI4
esv3585363	Chr.1:17267734 - 17296724 on Build GRCh38	Gain	PADI3 MIR3972
nsv516116	Chr.1:17265829 - 17287314 on Build GRCh38	Gain	PADI3 MIR3972
dgv129n100	Chr.1:17261667 - 17296402 on Build GRCh38	Gain	PADI3 MIR3972
nsv508958	Chr.1:17244847 - 17296637 on Build GRCh38	Insertion	PADI3 MIR3972 PADI1
nsv545693	Chr.1:17269316 - 17287314 on Build GRCh38	Gain	PADI3 MIR3972
nsv545692	Chr.1:17228358 - 17331039 on Build GRCh38	Loss	PADI3 MIR3972 PADI1 PADI4
esv2762268	Chr.1:17268401 - 17290614 on Build GRCh38	Gain	PADI3 MIR3972
nsv1011954	Chr.1:17268389 - 17290602 on Build GRCh38	Gain	PADI3 MIR3972

More Information

Additional Information:

For this assay, SNP(s) [rs114505088] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

chromatin organization
protein citrullination

Function(s)

protein-arginine deiminase activity
calcium ion binding