Hs00281817_cn

• Gene Symbol: NPDC1
• Assay Reference Genome Location: Chr.9:137040568 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 56654
• Gene Name: neural proliferation, differentiation and control 1
• Gene Aliases: CAB, CAB-, CAB-1, CAB1, NPDC-1
• Location: Chr.9:137039457-137046224 on Build GRCh38
• Assay Gene Location: Overlaps Intron 5 - Intron 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NPDC1	NM_015392.3			NP_056207.3
	AF272357.1			AAF76225.1
	AF283247.1			AAF82603.1
	AF285836.1			AAK27328.1
	AF327349.1			AAL56010.1
	AK054950.1
	AK074793.1			BAC11212.1
	AK225091.1
	AL050221.1			CAB43321.1
	BC004217.2			AAH04217.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	SAPCD2 C9orf142 MAN1B1 MAN1B1-AS1 GRIN1 CLIC3 PRR31 ABCA2 TMEM210 C9orf139 NPDC1 FUT7 LOC101930307 MIR3621 UAP1L1 DPP7 LCNL1 LRRC26 ENTPD2 PTGDS
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	SAPCD2 SSNA1 MIR4292 LCN12 GRIN1 CLIC3 STPG3 DPP7 C8G EXD3 TRAF2 MIR4479 PHPT1 ENTPD2 NOXA1 RNF224 C9orf142 FBXW5 MIR7114 TMEM210 C9orf139 NPDC1 FUT7 MIR3621 LCNL1 NSMF NDOR1 CYSRT1 TUBB4B NRARP CCDC183 PTGDS RNF208 RABL6 PRR31 ABCA2 UAP1L1 PNPLA7 C9orf173-AS1 FAM166A TOR4A SLC34A3 ENTPD8 NELFB MAN1B1 MAN1B1-AS1 ANAPC2 LOC101930307 MAMDC4 C9orf172 LRRC26 CCDC183-AS1 TMEM203 EDF1 TPRN
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	SAPCD2 C9orf142 MAN1B1 MAN1B1-AS1 LCN12 CLIC3 PRR31 ABCA2 C9orf139 NPDC1 FUT7 LOC101930307 UAP1L1 DPP7 LCNL1 C8G ENTPD2 PTGDS
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	SAPCD2 TMEM141 MIR4673 MIR4292 LCN12 GRIN1 CLIC3 SDCCAG3 LINC01451 DPP7 MIR4674 C8G TRAF2 NALT1 MIR4479 PHPT1 ENTPD2 SNAPC4 C9orf142 FBXW5 LCN8 SNHG7 NOTCH1 MIR6722 TMEM210 C9orf139 NPDC1 FAM69B FUT7 MIR3621 LCNL1 C9orf163 INPP5E MIR126 CCDC183 PTGDS RABL6 HSPC324 SNORA17A AGPAT2 PRR31 ABCA2 UAP1L1 DNLZ SNORA17B SEC16A LOC100128593 CARD9 PMPCA MAN1B1 LCN6 MAN1B1-AS1 LOC101930307 MAMDC4 LCN15 C9orf172 LCN10 LRRC26 CCDC183-AS1 EGFL7 EDF1
nsv616005	Chr.9:137036493 - 137173890 on Build GRCh38	Loss	SAPCD2 MAN1B1 MAN1B1-AS1 GRIN1 TMEM210 C9orf139 NPDC1 LOC101930307 MIR3621 UAP1L1 DPP7 LRRC26 ENTPD2
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	SAPCD2 MAN1B1 MAN1B1-AS1 SSNA1 GRIN1 ANAPC2 TMEM210 C9orf139 NPDC1 FUT7 LOC101930307 MIR3621 UAP1L1 DPP7 LRRC26 ENTPD2
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	ENTPD2 ABCA2 C9orf139 NPDC1 FUT7
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	SAPCD2 TMEM141 SSNA1 MIR4292 LCN12 GRIN1 CLIC3 STPG3 LINC01451 DPP7 C8G EXD3 TRAF2 MIR4479 PHPT1 ENTPD2 RNF224 C9orf142 FBXW5 LCN8 SNHG7 MIR6722 TMEM210 C9orf139 NPDC1 FAM69B FUT7 MIR3621 LCNL1 NDOR1 MIR126 CYSRT1 TUBB4B NRARP CCDC183 PTGDS RNF208 RABL6 HSPC324 SNORA17A AGPAT2 PRR31 ABCA2 UAP1L1 C9orf173-AS1 FAM166A TOR4A SLC34A3 SNORA17B LOC100128593 NELFB MAN1B1 LCN6 MAN1B1-AS1 ANAPC2 LOC101930307 MAMDC4 LCN15 C9orf172 LCN10 LRRC26 CCDC183-AS1 EGFL7 TMEM203 EDF1 TPRN

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Function(s)

protein binding