Hs00295274_cn

• Gene Symbol: NELFB
• Assay Reference Genome Location: Chr.9:137256953 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 25920
• Gene Name: negative elongation factor complex member B
• Gene Aliases: COBRA1, NELF-B
• Location: Chr.9:137255300-137273548 on Build GRCh38
• Assay Gene Location: Within Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NELFB	NM_015456.4	4	706	NP_056271.3
	AF464935.1	4	511	AAL69965.1
	AK022651.1	2	202	BAB14157.1
	AK091056.1	4	699
	BC011892.1	3	415	AAH11892.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13009n54	Chr.9:137173890 - 137327859 on Build GRCh38	Loss	STPG3 ANAPC2 CYSRT1 TOR4A C9orf173-AS1 SLC34A3 SSNA1 NELFB TMEM203 RNF208 NDOR1 RNF224 FAM166A TUBB4B EXD3 TPRN NRARP
dgv13011n54	Chr.9:137223996 - 137338927 on Build GRCh38	Loss	RNF224 FAM166A TUBB4B STPG3 CYSRT1 EXD3 TOR4A C9orf173-AS1 SLC34A3 NELFB NRARP
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	NPDC1 MAN1B1-AS1 PHPT1 C9orf172 MIR4479 FAM166A PTGDS FUT7 EXD3 MAN1B1 CLIC3 EDF1 NRARP LRRC26 STPG3 ANAPC2 MIR4292 LCN12 CCDC183-AS1 FBXW5 TUBB4B GRIN1 TPRN NSMF C9orf139 MIR7114 LOC101930307 TRAF2 MAMDC4 NOXA1 DPP7 ENTPD2 C8G CYSRT1 TOR4A C9orf173-AS1 SLC34A3 NELFB TMEM210 ABCA2 RNF208 RNF224 CCDC183 RABL6 PNPLA7 UAP1L1 C9orf142 SAPCD2 SSNA1 TMEM203 NDOR1 ENTPD8 PRR31 MIR3621 LCNL1
nsv951207	Chr.9:137136949 - 137379148 on Build GRCh38	Deletion	STPG3 ANAPC2 CYSRT1 TOR4A C9orf173-AS1 SLC34A3 SSNA1 NELFB TMEM210 TMEM203 RNF208 NDOR1 RNF224 FAM166A TUBB4B EXD3 MIR3621 GRIN1 TPRN NRARP LRRC26
nsv1161918	Chr.9:137118319 - 137438026 on Build GRCh38	Duplication	NOXA1 STPG3 ANAPC2 CYSRT1 TOR4A C9orf173-AS1 SLC34A3 SSNA1 NELFB TMEM210 TMEM203 RNF208 NDOR1 RNF224 FAM166A TUBB4B ENTPD8 EXD3 MIR3621 GRIN1 TPRN NRARP LRRC26
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	NPDC1 MAN1B1-AS1 PHPT1 LCN10 C9orf172 MIR126 MIR4479 FAM166A PTGDS LCN15 FUT7 EXD3 MAN1B1 CLIC3 TMEM141 EDF1 NRARP LRRC26 STPG3 ANAPC2 AGPAT2 MIR4292 LCN12 CCDC183-AS1 LCN8 FBXW5 TUBB4B SNORA17B GRIN1 TPRN C9orf139 LINC01451 LOC101930307 TRAF2 MAMDC4 LOC100128593 LCN6 DPP7 ENTPD2 C8G CYSRT1 TOR4A C9orf173-AS1 SLC34A3 NELFB TMEM210 FAM69B ABCA2 RNF208 SNORA17A RNF224 CCDC183 SNHG7 RABL6 UAP1L1 C9orf142 SAPCD2 SSNA1 TMEM203 NDOR1 MIR6722 HSPC324 PRR31 MIR3621 LCNL1 EGFL7

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

transcription from RNA polymerase II promoter
transcription elongation from RNA polymerase II promoter
negative regulation of transcription elongation from RNA polymerase II promoter
positive regulation of viral transcription

Function(s)

protein binding