Hs00305434_cn

• Gene Symbol: NPDC1
• Assay Reference Genome Location: Chr.9:137039768 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 56654
• Gene Name: neural proliferation, differentiation and control 1
• Gene Aliases: CAB, CAB-, CAB-1, CAB1, NPDC-1
• Location: Chr.9:137039457-137046224 on Build GRCh38
• Assay Gene Location: Within Exon 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NPDC1	NM_015392.3	9	1217	NP_056207.3
	AF272357.1	9	1064	AAF76225.1
	AF283247.1	8	870	AAF82603.1
	AF285836.1	9	1196	AAK27328.1
	AF327349.1	9	1149	AAL56010.1
	AK054950.1	8	1889
	AK074793.1	9	1170	BAC11212.1
	AK225091.1	9	1023
	AL050221.1	4	333	CAB43321.1
	BC004217.2	9	1101	AAH04217.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	TMEM210 LRRC26 MIR3621 FUT7 ABCA2 MAN1B1-AS1 LOC101930307 NPDC1 C9orf139 UAP1L1 DPP7 MAN1B1 PTGDS C9orf142 SAPCD2 GRIN1 CLIC3 PRR31 ENTPD2 LCNL1
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	NOXA1 ABCA2 EXD3 MAN1B1-AS1 PTGDS FAM166A CCDC183 C9orf142 SAPCD2 SSNA1 GRIN1 PRR31 STPG3 LRRC26 RNF208 PNPLA7 CYSRT1 FUT7 MAMDC4 TMEM203 C9orf173-AS1 TUBB4B C9orf139 NELFB ENTPD8 RABL6 MIR7114 FBXW5 TPRN LCNL1 CCDC183-AS1 EDF1 TRAF2 MIR4292 MIR3621 LOC101930307 NPDC1 ANAPC2 UAP1L1 DPP7 MAN1B1 CLIC3 C9orf172 ENTPD2 MIR4479 TMEM210 RNF224 NRARP NSMF C8G SLC34A3 TOR4A NDOR1 LCN12 PHPT1
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	FUT7 ABCA2 MAN1B1-AS1 LOC101930307 NPDC1 C8G C9orf139 UAP1L1 DPP7 MAN1B1 PTGDS C9orf142 SAPCD2 CLIC3 PRR31 LCN12 ENTPD2 LCNL1
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	AGPAT2 ABCA2 MAN1B1-AS1 MIR4673 C9orf163 PMPCA PTGDS CCDC183 C9orf142 SAPCD2 HSPC324 GRIN1 INPP5E PRR31 SNHG7 LRRC26 FUT7 MAMDC4 CARD9 C9orf139 RABL6 LINC01451 SDCCAG3 FBXW5 SNAPC4 LCNL1 CCDC183-AS1 EDF1 TRAF2 MIR4292 MIR3621 LCN8 NOTCH1 EGFL7 LOC101930307 NPDC1 UAP1L1 DPP7 MAN1B1 MIR6722 NALT1 CLIC3 C9orf172 SNORA17A ENTPD2 MIR4479 MIR4674 TMEM210 LOC100128593 LCN10 C8G SNORA17B SEC16A TMEM141 FAM69B DNLZ LCN15 LCN6 MIR126 LCN12 PHPT1
nsv616005	Chr.9:137036493 - 137173890 on Build GRCh38	Loss	TMEM210 LRRC26 MIR3621 MAN1B1-AS1 LOC101930307 NPDC1 C9orf139 UAP1L1 DPP7 MAN1B1 SAPCD2 GRIN1 ENTPD2
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	TMEM210 LRRC26 MIR3621 FUT7 MAN1B1-AS1 LOC101930307 NPDC1 C9orf139 ANAPC2 UAP1L1 DPP7 MAN1B1 SAPCD2 SSNA1 GRIN1 ENTPD2
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	FUT7 ABCA2 NPDC1 C9orf139 ENTPD2
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	AGPAT2 ABCA2 EXD3 MAN1B1-AS1 PTGDS FAM166A CCDC183 C9orf142 SAPCD2 SSNA1 HSPC324 GRIN1 PRR31 STPG3 SNHG7 LRRC26 RNF208 CYSRT1 FUT7 MAMDC4 TMEM203 C9orf173-AS1 TUBB4B C9orf139 NELFB RABL6 LINC01451 FBXW5 TPRN LCNL1 CCDC183-AS1 EDF1 TRAF2 MIR4292 MIR3621 LCN8 EGFL7 LOC101930307 NPDC1 ANAPC2 UAP1L1 DPP7 MAN1B1 MIR6722 CLIC3 C9orf172 SNORA17A ENTPD2 MIR4479 TMEM210 LOC100128593 LCN10 RNF224 NRARP C8G SLC34A3 SNORA17B TMEM141 FAM69B TOR4A LCN15 NDOR1 LCN6 MIR126 LCN12 PHPT1

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Function(s)

protein binding