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See other ABCF1 CNV Assays ›
Gene Symbol
ABCF1
Assay Reference Genome
Location

Chr.6:30582528 on build GRCh38
Cytoband
6p21.33
Assay ID Hs00330185_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 23

Gene Name:

 ATP binding cassette subfamily F member 1

Gene Aliases:

 ABC27, ABC50

Location:

 Chr.6:30571393-30591532 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 9 - Intron 9
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCF1 NM_001025091.1 NP_001020262.1
NM_001090.2 NP_001081.1
AB209564.1 BAD92801.1
AF027302.1 AAC70891.1
AK298061.1
AK307551.1
AL832430.1 CAH10648.1
BC034488.2 AAH34488.1
BC112923.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion UBD HCG27 HCG20 HLA-C OR12D2 GTF2H4 OR2H2 TRIM31-AS1 MDC1-AS1 LINC00243 LOC105375014 TRIM15 HLA-E TRIM39 PPP1R11 SNORD32B MIR877 MAS1L HLA-K DPCR1 HCG8 TRIM39-RPP21 RNF39 RPP21 C6orf136 MRPS18B IER3 MUC22 HCG22 MDC1 OR11A1 OR5V1 SFTA2 ABCF1 POU5F1 CCHCR1 HCG4 TRIM10 MUC21 GNL1 HCG9 PPP1R18 HLA-H HLA-G GABBR1 ZNRD1ASP PSORS1C3 MIR4640 IFITM4P OR10C1 HLA-J ZNRD1 PRR3 DDR1 LOC101929006 ATAT1 HCG18 FLOT1 TRIM26 HLA-A MICA LINC01015 NRM CDSN HLA-F-AS1 DHX16 HLA-L HLA-F TUBB C6orf15 HCG4B ZFP57 MOG PPP1R10 OR2H1 TCF19 OR12D3 HCG17 OR2J2 HLA-B VARS2 LOC554223 TRIM31 MIR6891 PSORS1C1 PSORS1C2 TRIM40 OR14J1
nsv601481 Chr.6:30454855 - 31316476 on Build GRCh38 Loss PSORS1C3 MIR4640 HCG27 HCG20 HLA-C GTF2H4 PRR3 DDR1 MDC1-AS1 LINC00243 ATAT1 LOC105375014 FLOT1 HLA-E MIR877 NRM CDSN DPCR1 DHX16 TUBB C6orf136 C6orf15 MRPS18B IER3 MUC22 HCG22 MDC1 SFTA2 PPP1R10 ABCF1 TCF19 POU5F1 VARS2 CCHCR1 MUC21 GNL1 PPP1R18 PSORS1C1 PSORS1C2
nsv5244 Chr.6:30577334 - 30622026 on Build GRCh38 Deletion MRPS18B MIR877 PPP1R10 ABCF1
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion UBD HCG27 HCG20 OR12D2 GTF2H4 OR2H2 TRIM31-AS1 MDC1-AS1 LINC00243 LOC105375014 TRIM15 HLA-E LINC01623 TRIM39 PPP1R11 SNORD32B MIR877 MAS1L HLA-K DPCR1 HCG8 LINC00533 TRIM39-RPP21 RNF39 RPP21 C6orf136 MRPS18B IER3 MUC22 HCG22 MDC1 OR11A1 OR5V1 SFTA2 ABCF1 LINC01556 POU5F1 CCHCR1 HCG4 TRIM10 MUC21 GNL1 HCG9 PPP1R18 HLA-H HLA-G GABBR1 ZNRD1ASP PSORS1C3 MIR4640 IFITM4P OR2W1 OR10C1 HLA-J ZNRD1 PRR3 DDR1 LOC101929006 ATAT1 HCG18 ZNF311 FLOT1 TRIM26 HLA-A HCG16 HCG14 LINC01015 NRM CDSN HLA-F-AS1 DHX16 TRIM27 HLA-L HLA-F TUBB C6orf15 HCG4B ZFP57 MOG PPP1R10 OR2H1 TCF19 OR12D3 OR2J3 HCG17 OR2J2 VARS2 LOC100129636 LOC554223 TRIM31 PSORS1C1 PSORS1C2 TRIM40 OR14J1 OR2B3
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion HCG27 HCG20 HLA-C GTF2H4 TRIM31-AS1 MDC1-AS1 LINC00243 LOC105375014 TRIM15 HLA-E TRIM39 PPP1R11 MIR877 HLA-K DPCR1 HCG8 TRIM39-RPP21 RNF39 RPP21 C6orf136 MRPS18B IER3 MUC22 HCG22 MDC1 SFTA2 ABCF1 POU5F1 CCHCR1 HCG4 TRIM10 MUC21 GNL1 HCG9 PPP1R18 HLA-H HLA-G ZNRD1ASP PSORS1C3 MIR4640 IFITM4P HLA-J ZNRD1 PRR3 DDR1 ATAT1 HCG18 FLOT1 TRIM26 HLA-A NRM CDSN HLA-F-AS1 DHX16 HLA-L HLA-F TUBB C6orf15 HCG4B PPP1R10 TCF19 HCG17 VARS2 LOC554223 TRIM31 PSORS1C1 PSORS1C2 TRIM40
esv2731791 Chr.6:30404802 - 31346410 on Build GRCh38 Deletion PSORS1C3 MIR4640 HCG27 HCG20 HLA-C GTF2H4 PRR3 DDR1 MDC1-AS1 LINC00243 ATAT1 LOC105375014 FLOT1 HLA-E MIR877 NRM CDSN DPCR1 DHX16 TUBB C6orf136 C6orf15 MRPS18B IER3 MUC22 HCG22 MDC1 SFTA2 PPP1R10 ABCF1 TCF19 POU5F1 VARS2 CCHCR1 MUC21 GNL1 PPP1R18 PSORS1C1 PSORS1C2
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss HCG27 HCG20 HLA-C GTF2H4 TRIM31-AS1 MDC1-AS1 LINC00243 LOC105375014 TRIM15 HLA-E TRIM39 PPP1R11 MIR877 HLA-K DPCR1 HCG8 TRIM39-RPP21 RNF39 RPP21 C6orf136 MRPS18B IER3 MUC22 HCG22 MDC1 SFTA2 ABCF1 POU5F1 CCHCR1 TRIM10 MUC21 GNL1 HCG9 PPP1R18 HLA-H ZNRD1ASP PSORS1C3 MIR4640 HLA-J ZNRD1 PRR3 DDR1 ATAT1 HCG18 FLOT1 TRIM26 HLA-A NRM CDSN DHX16 HLA-L TUBB C6orf15 HCG4B PPP1R10 TCF19 HCG17 VARS2 TRIM31 PSORS1C1 PSORS1C2 TRIM40
esv2670269 Chr.6:30498650 - 31067145 on Build GRCh38 Deletion MIR4640 HCG20 GTF2H4 PRR3 DDR1 MDC1-AS1 LINC00243 ATAT1 LOC105375014 FLOT1 MIR877 NRM DPCR1 DHX16 TUBB C6orf136 MRPS18B IER3 MUC22 HCG22 MDC1 SFTA2 PPP1R10 ABCF1 VARS2 MUC21 GNL1 PPP1R18
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication HCG27 HCG20 HLA-C GTF2H4 TRIM31-AS1 MDC1-AS1 LINC00243 LOC105375014 TRIM15 HLA-E HCP5 TRIM39 PPP1R11 MIR877 DPCR1 HCG8 TRIM39-RPP21 RNF39 RPP21 C6orf136 MRPS18B IER3 MUC22 HCG22 MDC1 SFTA2 ABCF1 POU5F1 CCHCR1 TRIM10 MUC21 GNL1 PPP1R18 HCG26 ZNRD1ASP PSORS1C3 MIR4640 HLA-J ZNRD1 PRR3 DDR1 ATAT1 HCG18 FLOT1 TRIM26 MICA NRM CDSN DHX16 HLA-L TUBB C6orf15 PPP1R10 TCF19 HCG17 HLA-B VARS2 LOC102725068 TRIM31 MIR6891 PSORS1C1 PSORS1C2 TRIM40

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

translation elongation factor

Gene Ontology Categories:

Function(s) Process(es)


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