Name: [Hs00341503_cn] [ZKSCAN1]
Creator: Thermo Fisher Scientific
Keywords: [ZKSCAN1] Assay, [zinc finger with KRAB and SCAN domains 1] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	7586
Gene Name:	zinc finger with KRAB and SCAN domains 1
Gene Aliases:	9130423L19Rik, KOX18, PHZ-37, ZNF139, ZNF36, ZSCAN33
Location:	Chr.7:100015572-100045523 on Build GRCh38
Assay Gene Location:	Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ZKSCAN1	NM_001287054.1	1	47	NP_001273983.1
	NM_001287055.1	1	47	NP_001273984.1
	NM_003439.2	1	47	NP_003430.1
	XM_005250565.4			XP_005250622.1
	AF454940.1			AAP97699.1
	AK054676.1
	AK074116.1			BAB84942.1
	AK091471.1
	AL833578.1
	AY260738.1			AAP83961.1
	BC022378.1			AAH22378.1
	BX640646.1			CAE45792.1
	HY140376.1	1	53

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv32694	Chr.7:99967985 - 100032296 on Build GRCh38	Loss	ZKSCAN1 AZGP1 AZGP1P1
nsv433391	Chr.7:99966338 - 100020983 on Build GRCh38	Gain	ZKSCAN1 AZGP1 AZGP1P1
nsv469687	Chr.7:99974920 - 100157518 on Build GRCh38	Loss	COPS6 MIR93 MIR106B AZGP1P1 LAMTOR4 MBLAC1 ZNF3 AP4M1 MIR4658 ZKSCAN1 C7orf43 TAF6 AZGP1 ZSCAN21 CNPY4 MIR25 MCM7
esv2734888	Chr.7:99975623 - 101290285 on Build GRCh38	Deletion	UFSP1 TSC22D4 MIR106B ZNHIT1 PILRB TRIP6 PPP1R35 AP1S1 SPDYE3 CLDN15 SAP25 STAG3L5P-PVRIG2P-PILRB ZSCAN21 GIGYF1 CNPY4 TFR2 TRIM56 STAG3 MCM7 COPS6 MIR93 MBLAC1 EPO ZNF3 AGFG2 GAL3ST4 PVRIG2P MIR4658 POP7 LOC105375429 LRCH4 AZGP1 MIR6840 MOGAT3 MIR25 ZAN MIR4653 C7orf61 MUC3A GPC2 PCOLCE ZCWPW1 ACTL6B LAMTOR4 ZASP GNB2 SERPINE1 FIS1 NAT16 MIR6875 PCOLCE-AS1 MOSPD3 C7orf43 TAF6 MEPCE EPHB4 MUC12 FBXO24 SRRT STAG3L5P AZGP1P1 PVRIG PLOD3 VGF MUC17 AP4M1 LOC102724094 SLC12A9 PILRA GATS ZKSCAN1 ACHE PMS2P1 NYAP1
esv23518	Chr.7:99966510 - 100027788 on Build GRCh38	Gain	ZKSCAN1 AZGP1 AZGP1P1