Hs00343705_cn

• Gene Symbol: SPATA2L
• Assay Reference Genome Location: Chr.16:89697034 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 124044
• Gene Name: spermatogenesis associated 2 like
• Gene Aliases: C16orf76, tamo
• Location: Chr.16:89696357-89701993 on Build GRCh38
• Assay Gene Location: Within Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SPATA2L	NM_152339.3	3	1662	NP_689552.2
	XM_005256279.4	3	2079	XP_005256336.1
	AF070574.1	1	893
	AK127372.1	2	1466
	BC027606.1			AAH27606.1
	BC039608.1	3	1640	AAH39608.1
	BC053588.1	3	1644	AAH53588.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv952079	Chr.16:89685593 - 89749492 on Build GRCh38	Deletion	CDK10 FANCA ZNF276 VPS9D1 VPS9D1-AS1 SPATA2L
nsv573743	Chr.16:89664419 - 89853617 on Build GRCh38	Gain	CDK10 FANCA ZNF276 VPS9D1 VPS9D1-AS1 LOC107984817 SPIRE2 LOC105371419 SPATA2L SPATA33
esv2762221	Chr.16:89610380 - 90039318 on Build GRCh38	Gain+Loss	CDK10 FANCA MC1R GAS8-AS1 VPS9D1 VPS9D1-AS1 CENPBD1 SPATA2L AFG3L1P SPATA33 DPEP1 ZNF276 LOC107984817 DBNDD1 TUBB3 GAS8 SPIRE2 LOC105371419 DEF8 CHMP1A TCF25
nsv516241	Chr.16:89696002 - 89723490 on Build GRCh38	Loss	CDK10 ZNF276 VPS9D1 VPS9D1-AS1 SPATA2L
nsv428331	Chr.16:89216635 - 90185980 on Build GRCh38	Gain+Loss	FAM157C LOC101927817 PRDM7 MC1R RPL13 VPS9D1 VPS9D1-AS1 SPATA2L DPEP1 LOC105371414 ZNF778 TUBB3 TUBB8P7 SPG7 CPNE7 CDK10 FANCA SNORD68 GAS8-AS1 ANKRD11 LOC100287036 CENPBD1 AFG3L1P SPATA33 ZNF276 URAHP LOC107984817 DBNDD1 GAS8 SPIRE2 LOC105371419 DEF8 CHMP1A TCF25
nsv833330	Chr.16:89678466 - 89741783 on Build GRCh38	Loss	CDK10 FANCA ZNF276 VPS9D1 VPS9D1-AS1 SPATA2L
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	FAM157C PIEZO1 LOC101927817 LOC101927793 MC1R RPL13 VPS9D1 SLC22A31 LOC339059 MVD LOC105371409 CDT1 CYBA TUBB3 SPG7 ACSF3 FANCA PABPN1L AFG3L1P LINC00304 LOC100129697 CTU2 URAHP LOC107984817 DEF8 CHMP1A SNAI3-AS1 PRDM7 GALNS VPS9D1-AS1 SPATA2L LOC100289580 LOC400558 DPEP1 LOC105371414 ZNF778 TUBB8P7 MIR4722 CPNE7 RNF166 CDK10 SNORD68 GAS8-AS1 LOC107987238 ANKRD11 TRAPPC2L LOC100287036 CENPBD1 SPATA33 ZNF276 IL17C CBFA2T3 DBNDD1 SNAI3 GAS8 SPIRE2 CDH15 LOC105371419 APRT TCF25
nsv509639	Chr.16:89513538 - 89775915 on Build GRCh38	Insertion	CPNE7 CDK10 FANCA SNORD68 RPL13 VPS9D1 VPS9D1-AS1 SPATA2L SPATA33 DPEP1 ZNF276 SPG7 CHMP1A

More Information

Additional Information:

For this assay, SNP(s) [rs76085307] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation