Hs00355914_cn

• Gene Symbol: APOBR
• Assay Reference Genome Location: Chr.16:28496669 on build GRCh38
• Cytoband: 16p12.1

Target Gene Details

• Entrez Gene ID: 55911
• Gene Name: apolipoprotein B receptor
• Gene Aliases: APOB100R, APOB48R
• Location: Chr.16:28494649-28498970 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
APOBR	NM_018690.3	2	1661	NP_061160.3
	AF141332.1	3	1611	AAF76255.1
	AF141334.1	3	1611	AAF78765.1
	BC119786.1	3	1611
	BC119788.1	3	1406

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv509608	Chr.16:28449797 - 28632895 on Build GRCh38	Insertion	APOBR NUPR1 SULT1A1 CLN3 SULT1A2 SGF29 IL27
esv2758640	Chr.16:28163817 - 29139232 on Build GRCh38	Gain+Loss	MIR6862-2 LOC101928215 NUPR1 SH2B1 XPO6 SULT1A2 MIR6862-1 SPNS1 SBK1 APOBR RABEP2 ATXN2L NPIP MIR4517 CD19 SULT1A1 TUFM RRN3P2 NPIPB9 IL27 EIF3CL NPIPB6 LAT EIF3C MIR4721 NFATC2IP CLN3 ATP2A1 ATP2A1-AS1 SGF29 NPIPB8
nsv1059555	Chr.16:28373144 - 29195838 on Build GRCh38	Gain	MIR6862-2 LOC101928215 NUPR1 SH2B1 SULT1A2 MIR6862-1 SPNS1 APOBR RABEP2 ATXN2L NPIP MIR4517 CD19 SULT1A1 TUFM RRN3P2 NPIPB9 IL27 EIF3CL LAT LOC107984832 EIF3C MIR4721 NFATC2IP CLN3 ATP2A1 ATP2A1-AS1 SGF29 NPIPB8
nsv833180	Chr.16:28346157 - 28574165 on Build GRCh38	Loss	NPIPB6 APOBR NUPR1 CLN3 MIR6862-1 SGF29 IL27 EIF3CL
nsv9415	Chr.16:28468881 - 28498959 on Build GRCh38	Gain	APOBR CLN3

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

triglyceride metabolic process
lipid transport
receptor-mediated endocytosis
cholesterol metabolic process

Function(s)

very-low-density lipoprotein particle receptor activity