Hs00362112_cn

• Gene Symbol: C9orf173-AS1
• Assay Reference Genome Location: Chr.9:137251367 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 100129722
• Gene Name: C9orf173 antisense RNA 1
• Gene Aliases: -
• Location: Chr.9:137250219-137253497 on Build GRCh38
• Assay Gene Location: Overlaps Intron 3 - Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf173-AS1	NR_038389.1
	AK097764.1

Target Gene Details

• Entrez Gene ID: 441476
• Gene Name: sperm-tail PG-rich repeat containing 3
• Gene Aliases: C9orf173
• Location: Chr.9:137250840-137253483 on Build GRCh38
• Assay Gene Location: Overlaps Exon 2 - Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
STPG3	NM_001004353.3			NP_001004353.2
	NM_001256699.1			NP_001243628.1
	NM_001256700.1			NP_001243629.1
	NM_001256701.1			NP_001243630.1
	NR_046339.1
	NR_046340.1
	XM_006717113.2			XP_006717176.1
	XM_006717115.2			XP_006717178.1
	AK097565.1			BAC05104.1
	BC033939.1			AAH33939.2
	BC132726.1
	BC144308.2
	BC144311.1
	BC144314.1
	DB453255.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13009n54	Chr.9:137173890 - 137327859 on Build GRCh38	Loss	NRARP RNF224 ANAPC2 NELFB SLC34A3 STPG3 TUBB4B SSNA1 RNF208 TOR4A FAM166A NDOR1 C9orf173-AS1 TMEM203 CYSRT1 TPRN EXD3
dgv13011n54	Chr.9:137223996 - 137338927 on Build GRCh38	Loss	NRARP TUBB4B RNF224 TOR4A FAM166A NELFB SLC34A3 C9orf173-AS1 STPG3 CYSRT1 EXD3
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	SLC34A3 STPG3 LOC101930307 SSNA1 PTGDS RNF208 ENTPD8 TOR4A C9orf139 NSMF TPRN PRR31 UAP1L1 TRAF2 MAMDC4 EDF1 PNPLA7 PHPT1 CCDC183-AS1 FAM166A NOXA1 RABL6 MAN1B1 MIR4479 CYSRT1 CLIC3 MIR3621 RNF224 LCNL1 ANAPC2 NELFB C9orf142 MIR7114 FBXW5 C8G MAN1B1-AS1 EXD3 NRARP ABCA2 TMEM210 CCDC183 ENTPD2 FUT7 DPP7 GRIN1 C9orf172 LCN12 LRRC26 TUBB4B NDOR1 C9orf173-AS1 TMEM203 MIR4292 SAPCD2 NPDC1
nsv951207	Chr.9:137136949 - 137379148 on Build GRCh38	Deletion	NRARP TMEM210 RNF224 ANAPC2 NELFB SLC34A3 STPG3 GRIN1 LRRC26 TUBB4B SSNA1 RNF208 TOR4A FAM166A NDOR1 C9orf173-AS1 TMEM203 CYSRT1 TPRN MIR3621 EXD3
nsv1161918	Chr.9:137118319 - 137438026 on Build GRCh38	Duplication	NRARP TMEM210 RNF224 ANAPC2 NELFB SLC34A3 STPG3 GRIN1 LRRC26 TUBB4B SSNA1 RNF208 ENTPD8 TOR4A FAM166A NDOR1 NOXA1 C9orf173-AS1 TMEM203 CYSRT1 TPRN MIR3621 EXD3
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	FAM69B LCN8 TMEM141 LOC100128593 SLC34A3 STPG3 LCN15 LOC101930307 MIR126 SSNA1 PTGDS RNF208 TOR4A C9orf139 SNHG7 TPRN LINC01451 PRR31 UAP1L1 SNORA17A TRAF2 LCN10 MAMDC4 AGPAT2 EDF1 PHPT1 MIR6722 CCDC183-AS1 FAM166A RABL6 MAN1B1 MIR4479 CYSRT1 CLIC3 MIR3621 RNF224 EGFL7 LCNL1 ANAPC2 NELFB C9orf142 FBXW5 C8G MAN1B1-AS1 EXD3 SNORA17B NRARP ABCA2 TMEM210 CCDC183 ENTPD2 FUT7 DPP7 GRIN1 C9orf172 LCN12 LRRC26 TUBB4B LCN6 NDOR1 C9orf173-AS1 TMEM203 HSPC324 MIR4292 SAPCD2 NPDC1

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

structural protein