Hs00408143_cn

• Gene Symbol: POU4F1
• Assay Reference Genome Location: Chr.13:78599501 on build GRCh38
• Cytoband: 13q31.1

Target Gene Details

• Entrez Gene ID: 5457
• Gene Name: POU class 4 homeobox 1
• Gene Aliases: BRN3A, Oct-T1, RDC-1, brn-3A
• Location: Chr.13:78599092-78603560 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
POU4F1	NM_006237.3	2	3408	NP_006228.3
	BM714015.1	1	83
	L20433.1	2	3408	AAA65605.1
	X64624.1	1	3201	CAA45907.1

Target Gene Details

• Entrez Gene ID: 100874222
• Gene Name: RNF219 antisense RNA 1
• Gene Aliases: POU4F1-AS1
• Location: Chr.13:78054855-78617325 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
RNF219-AS1	NR_047001.1
	AK095779.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv339n67	Chr.13:78560929 - 78651758 on Build GRCh38	Gain	RNF219 RNF219-AS1 POU4F1 LOC107987188
nsv562410	Chr.13:78598658 - 78603384 on Build GRCh38	Loss	RNF219-AS1 POU4F1 LOC107987188
nsv826726	Chr.13:78598212 - 78605820 on Build GRCh38	Gain	RNF219-AS1 POU4F1 LOC107987188
dgv234n27	Chr.13:78566708 - 78642283 on Build GRCh38	Loss	RNF219 RNF219-AS1 POU4F1 LOC107987188
nsv1097	Chr.13:78576585 - 78609180 on Build GRCh38	Insertion	RNF219-AS1 POU4F1 LOC107987188

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
suckling behavior
ventricular compact myocardium morphogenesis
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
axonogenesis
synapse assembly
mesoderm development
cell migration in hindbrain
trigeminal nerve development
central nervous system neuron differentiation
habenula development
positive regulation of apoptotic process
negative regulation of neuron apoptotic process
positive regulation of transcription from RNA polymerase II promoter
neuron fate specification
sensory system development
peripheral nervous system neuron development
regulation of neurogenesis
proprioception involved in equilibrioception
innervation
positive regulation of cell cycle arrest
regulation of signal transduction by p53 class mediator
negative regulation of transcription elongation from RNA polymerase I promoter

Function(s)

RNA polymerase II distal enhancer sequence-specific DNA binding
RNA polymerase II transcription factor activity, sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding