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See other GPANK1 CNV Assays ›
Gene Symbol
GPANK1
Assay Reference Genome
Location

Chr.6:31662660 on build GRCh38
Cytoband
6p21.33
Assay ID Hs00437733_cn
Size
Availability Made To Order
Catalog # 4400291
Price 4,505.00
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4505.0
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Assay Details

Target Gene Details

Entrez Gene ID:

 7918

Gene Name:

 G-patch domain and ankyrin repeats 1

Gene Aliases:

 ANKRD59, BAT4, D6S54E, G5, GPATCH10

Location:

 Chr.6:31661229-31666283 on Build GRCh38

Assay Gene Location:

 Within Exon 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
GPANK1 NM_001199237.1 4 1362 NP_001186166.1
NM_001199238.1 4 1231 NP_001186167.1
NM_001199239.1 4 1228 NP_001186168.1
NM_001199240.1 4 1014 NP_001186169.1
NM_033177.3 3 1338 NP_149417.1
XM_005249403.3 4 1365 XP_005249460.1
XM_006715204.1 4 1043 XP_006715267.1
XM_011514909.1 4 1083 XP_011513211.1
XM_011514910.1 4 1080 XP_011513212.1
AJ420471.1 3 930
AK123707.1 4 1362
AK314056.1 4 1231
BC008783.1 3 1328 AAH08783.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv462871 Chr.6:31607499 - 31664357 on Build GRCh38 Loss SNORA38 AIF1 MIR6832 APOM BAG6 GPANK1 PRRC2A C6orf47
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion LTA PBX2 MSH5 TNXA LSM2 SAPCD1-AS1 SAPCD1 PRRT1 LY6G5C NEU1 HLA-DRB5 MICB CSNK2B DDX39B-AS1 LOC100507547 NCR3 LOC102725068 LY6G6C MIR6832 C2-AS1 SKIV2L NELFE ATP6V1G2-DDX39B ATP6V1G2 HCG23 GPANK1 PPT2 C6orf25 ATF6B CLIC1 LY6G6E SNORA38 HCP5 MCCD1 HSPA1L MIR6721 HLA-DRB6 HLA-DRA VWA7 HSPA1B GPSM3 HLA-DRB1 MIR4646 EGFL8 LTB PRRC2A C6orf47 PPT2-EGFL8 C2 SNORD52 NFKBIL1 LY6G5B EHMT2 LST1 HCG26 C4A DDX39B TNXB MIR1236 LY6G6D HSPA1A MIR6833 AIF1 RNF5 C6orf48 DDAH2 BTNL2 C4B ZBTB12 CYP21A2 FKBPL SNORD84 AGPAT1 NOTCH4 LOC100287329 MSH5-SAPCD1 SLC44A4 LOC101929163 AGER STK19 SNORD48 ABHD16A CFB C6orf10 DXO CYP21A1P LY6G6F APOM BAG6 VARS TNF SNORD117
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss LTA MSH5 TNXA LSM2 SAPCD1-AS1 SAPCD1 LY6G5C NEU1 MICB CSNK2B DDX39B-AS1 NCR3 LOC102725068 LY6G6C MIR6832 C2-AS1 MICA SKIV2L NELFE ATP6V1G2-DDX39B ATP6V1G2 GPANK1 C6orf25 CLIC1 LY6G6E SNORA38 HCP5 MCCD1 HSPA1L VWA7 HSPA1B MIR4646 LTB PRRC2A C6orf47 C2 SNORD52 NFKBIL1 LY6G5B EHMT2 LST1 HLA-B HCG26 C4A MIR6891 DDX39B TNXB MIR1236 LY6G6D HSPA1A AIF1 C6orf48 DDAH2 C4B ZBTB12 CYP21A2 SNORD84 LOC100287329 MSH5-SAPCD1 SLC44A4 STK19 SNORD48 ABHD16A CFB DXO CYP21A1P LY6G6F APOM BAG6 VARS TNF SNORD117
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion SLC39A7 LTA PBX2 MSH5 TNXA SAPCD1-AS1 PRRT1 LY6G5C NEU1 DDX39B-AS1 COL11A2 MIR6832 C2-AS1 VPS52 SKIV2L HLA-DQB2 PSMB9 HLA-DMB HCG23 PFDN6 PPT2 HLA-DPB2 C6orf25 LY6G6E SNORA38 HCP5 MIR6873 RPS18 HLA-DQA2 HSPA1L HLA-DRB6 HSPA1B PSMB8 MIR4646 EGFL8 LTB C6orf47 B3GALT4 HSD17B8 EHMT2 BRD2 HLA-DPA1 TAPBP TAP1 TNXB HLA-DOA MIR1236 RGL2 AIF1 C6orf48 DDAH2 C4B CYP21A2 AGPAT1 NOTCH4 HCG24 HLA-DQB1-AS1 SLC44A4 WDR46 AGER STK19 SNORD48 LOC100294145 HLA-DMA CFB C6orf10 DXO PPP1R2P1 LY6G6F APOM BAG6 VARS HLA-DOB LSM2 SAPCD1 HLA-DRB5 MICB CSNK2B LOC100507547 NCR3 LOC102725068 LY6G6C NELFE ATP6V1G2-DDX39B ATP6V1G2 GPANK1 ZBTB22 SYNGAP1 ATF6B CLIC1 MCCD1 MIR6721 DAXX MIR5004 RXRB HLA-DRA HLA-DPB1 VWA7 ZBTB9 GPSM3 HLA-DRB1 PRRC2A PHF1 PPT2-EGFL8 C2 SNORD52 NFKBIL1 HLA-DQA1 LY6G5B LST1 MIR219A1 HCG26 C4A KIFC1 DDX39B LY6G6D HSPA1A MIR6833 MIR6834 RNF5 CUTA BTNL2 ZBTB12 HLA-DQB1 FKBPL SNORD84 LOC100287329 HCG25 MSH5-SAPCD1 MIR3135B LOC101929163 RING1 PSMB8-AS1 ABHD16A CYP21A1P TAP2 TNF SNORD117
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion SLC39A7 LTA PBX2 MSH5 TNXA SAPCD1-AS1 PRRT1 LY6G5C NEU1 DDX39B-AS1 COL11A2 MIR6832 C2-AS1 VPS52 SKIV2L HLA-DQB2 PSMB9 HLA-DMB HCG23 PFDN6 PPT2 HLA-DPB2 C6orf25 LY6G6E SNORA38 HCP5 MIR6873 RPS18 HLA-DQA2 HSPA1L HLA-DRB6 HSPA1B PSMB8 MIR4646 EGFL8 LTB C6orf47 B3GALT4 HSD17B8 EHMT2 BRD2 HLA-DPA1 TAPBP TAP1 TNXB HLA-DOA MIR1236 RGL2 AIF1 C6orf48 DDAH2 C4B CYP21A2 AGPAT1 NOTCH4 HCG24 HLA-DQB1-AS1 SLC44A4 WDR46 AGER STK19 SNORD48 LOC100294145 HLA-DMA CFB C6orf10 DXO PPP1R2P1 LY6G6F APOM BAG6 VARS HLA-DOB LSM2 SAPCD1 HLA-DRB5 MICB CSNK2B LOC100507547 NCR3 LOC102725068 LY6G6C NELFE ATP6V1G2-DDX39B ATP6V1G2 GPANK1 ZBTB22 SYNGAP1 ATF6B CLIC1 MCCD1 MIR6721 DAXX MIR5004 RXRB HLA-DRA HLA-DPB1 VWA7 ZBTB9 GPSM3 HLA-DRB1 PRRC2A PHF1 PPT2-EGFL8 C2 SNORD52 NFKBIL1 HLA-DQA1 LY6G5B LST1 MIR219A1 HCG26 C4A KIFC1 DDX39B LY6G6D HSPA1A MIR6833 MIR6834 RNF5 CUTA BTNL2 ZBTB12 HLA-DQB1 FKBPL SNORD84 LOC100287329 HCG25 MSH5-SAPCD1 MIR3135B LOC101929163 RING1 PSMB8-AS1 ABHD16A CYP21A1P TAP2 TNF SNORD117
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss LTA PBX2 MSH5 TNXA LSM2 SAPCD1-AS1 SAPCD1 PRRT1 LY6G5C NEU1 MICB CSNK2B DDX39B-AS1 LOC100507547 NCR3 LOC102725068 LY6G6C MIR6832 C2-AS1 MICA SKIV2L NELFE ATP6V1G2-DDX39B ATP6V1G2 HCG23 GPANK1 PPT2 C6orf25 ATF6B CLIC1 LY6G6E SNORA38 HCP5 MCCD1 HSPA1L MIR6721 HLA-DRA VWA7 HSPA1B GPSM3 MIR4646 EGFL8 LTB PRRC2A C6orf47 PPT2-EGFL8 C2 SNORD52 NFKBIL1 LY6G5B EHMT2 LST1 HLA-B HCG26 C4A MIR6891 DDX39B TNXB MIR1236 LY6G6D HSPA1A MIR6833 AIF1 RNF5 C6orf48 DDAH2 BTNL2 C4B ZBTB12 CYP21A2 FKBPL SNORD84 AGPAT1 NOTCH4 LOC100287329 MSH5-SAPCD1 SLC44A4 LOC101929163 AGER STK19 SNORD48 ABHD16A CFB C6orf10 DXO CYP21A1P LY6G6F APOM BAG6 VARS TNF SNORD117
nsv1161370 Chr.6:31600692 - 31714252 on Build GRCh38 Deletion SNORA38 LY6G5B LY6G5C CSNK2B ABHD16A AIF1 MIR6832 MIR4646 LY6G6F APOM BAG6 GPANK1 PRRC2A C6orf47 LY6G6E
nsv830627 Chr.6:31528437 - 31692173 on Build GRCh38 Loss NFKBIL1 LTA LY6G5B LST1 LY6G5C DDX39B CSNK2B DDX39B-AS1 NCR3 AIF1 MIR6832 ATP6V1G2-DDX39B ATP6V1G2 GPANK1 SNORD84 LOC100287329 SNORA38 MCCD1 ABHD16A LTB APOM BAG6 PRRC2A C6orf47 TNF SNORD117

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Gene Ontology Categories:

Process(es)


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