Hs00440073_cn

• Gene Symbol: NELFB
• Assay Reference Genome Location: Chr.9:137266970 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 25920
• Gene Name: negative elongation factor complex member B
• Gene Aliases: COBRA1, NELF-B
• Location: Chr.9:137255300-137273548 on Build GRCh38
• Assay Gene Location: Overlaps Intron 8 - Exon 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NELFB	NM_015456.4			NP_056271.3
	AB033008.1			BAA86496.1
	AF464935.1			AAL69965.1
	AK022651.1			BAB14157.1
	AK091056.1
	AL050280.1			CAB43381.3
	BC011892.1			AAH11892.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13009n54	Chr.9:137173890 - 137327859 on Build GRCh38	Loss	STPG3 EXD3 RNF224 TPRN NELFB NRARP ANAPC2 C9orf173-AS1 NDOR1 SLC34A3 SSNA1 CYSRT1 TMEM203 FAM166A RNF208 TUBB4B TOR4A
dgv13011n54	Chr.9:137223996 - 137338927 on Build GRCh38	Loss	STPG3 EXD3 SLC34A3 RNF224 CYSRT1 FAM166A NELFB TUBB4B NRARP TOR4A C9orf173-AS1
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	TRAF2 MIR7114 PRR31 FBXW5 C9orf139 NPDC1 SSNA1 ABCA2 LCNL1 DPP7 LCN12 STPG3 MAN1B1 NELFB C9orf173-AS1 SLC34A3 CYSRT1 TMEM203 FAM166A RNF208 MIR3621 TMEM210 NOXA1 RABL6 EXD3 TPRN PHPT1 CCDC183 TUBB4B C9orf172 MIR4479 PNPLA7 MAN1B1-AS1 GRIN1 LRRC26 EDF1 RNF224 CLIC3 FUT7 C8G NRARP NSMF ANAPC2 SAPCD2 CCDC183-AS1 MAMDC4 C9orf142 ENTPD2 NDOR1 PTGDS MIR4292 LOC101930307 ENTPD8 TOR4A UAP1L1
nsv951207	Chr.9:137136949 - 137379148 on Build GRCh38	Deletion	STPG3 EXD3 RNF224 TPRN NELFB NRARP ANAPC2 C9orf173-AS1 NDOR1 SLC34A3 SSNA1 CYSRT1 TMEM203 FAM166A RNF208 TUBB4B MIR3621 TMEM210 TOR4A GRIN1 LRRC26
nsv1161918	Chr.9:137118319 - 137438026 on Build GRCh38	Duplication	STPG3 EXD3 RNF224 TPRN NELFB NRARP ANAPC2 C9orf173-AS1 NDOR1 SLC34A3 SSNA1 CYSRT1 TMEM203 FAM166A RNF208 TUBB4B MIR3621 TMEM210 ENTPD8 TOR4A NOXA1 GRIN1 LRRC26
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	LCN6 TRAF2 PRR31 FBXW5 C9orf139 NPDC1 SSNA1 ABCA2 LCN8 LCNL1 DPP7 LCN12 STPG3 MAN1B1 TMEM141 NELFB AGPAT2 LOC100128593 C9orf173-AS1 MIR126 SLC34A3 CYSRT1 TMEM203 FAM166A RNF208 MIR3621 TMEM210 FAM69B RABL6 LCN10 EXD3 HSPC324 SNORA17A TPRN PHPT1 LCN15 CCDC183 TUBB4B C9orf172 MIR4479 LINC01451 MAN1B1-AS1 GRIN1 LRRC26 EDF1 RNF224 CLIC3 FUT7 C8G NRARP ANAPC2 SAPCD2 CCDC183-AS1 MIR6722 MAMDC4 C9orf142 ENTPD2 NDOR1 PTGDS SNHG7 MIR4292 LOC101930307 SNORA17B TOR4A EGFL7 UAP1L1

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

transcription from RNA polymerase II promoter
transcription elongation from RNA polymerase II promoter
negative regulation of transcription elongation from RNA polymerase II promoter
positive regulation of viral transcription

Function(s)

protein binding