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See other SYNGAP1 CNV Assays ›
Gene Symbol
SYNGAP1
Assay Reference Genome
Location

Chr.6:33425852 on build GRCh38
Cytoband
6p21.32
Assay ID Hs00451654_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 8831

Gene Name:

 synaptic Ras GTPase activating protein 1

Gene Aliases:

 MRD5, RASA1, RASA5, SYNGAP

Location:

 Chr.6:33420070-33453689 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 3 - Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SYNGAP1 NM_006772.2 NP_006763.2
AK094225.1
AK307888.1
DA057307.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830637 Chr.6:33361588 - 33542927 on Build GRCh38 Loss CUTA PHF1 SYNGAP1 KIFC1 ZBTB9 MIR5004
nsv830635 Chr.6:33270228 - 33446010 on Build GRCh38 Loss CUTA DAXX RPS18 SYNGAP1 VPS52 MIR6834 WDR46 RGL2 PHF1 ZBTB22 TAPBP KIFC1 MIR5004 PFDN6 B3GALT4 MIR6873
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion PSMB8-AS1 C6orf10 EHMT2 SNORD52 AGPAT1 VPS52 HLA-DQA2 HLA-DRB1 MIR6834 BAG6 LST1 SNORD84 SLC44A4 ATF6B HLA-DOA COL11A2 AIF1 LY6G5C PPT2 HLA-DMA LTA DXO CLIC1 GPANK1 CYP21A2 KIFC1 HSPA1L LOC100287329 C6orf47 HSPA1B HLA-DRB5 C4A MIR6873 PRRT1 LY6G6E MIR3135B HLA-DQA1 PRRC2A PPT2-EGFL8 DDX39B CSNK2B LOC102725068 C6orf48 HLA-DQB2 PBX2 APOM VWA7 SNORD117 HCG25 C2-AS1 PPP1R2P1 VARS TAP1 HSPA1A HCP5 HLA-DPB2 MIR219A1 ABHD16A NELFE C2 ZBTB22 TAPBP MSH5 MIR1236 PFDN6 TNF C4B FKBPL NFKBIL1 DDAH2 HLA-DRA EGFL8 SKIV2L HLA-DRB6 TNXB MIR6833 WDR46 SNORA38 HLA-DPA1 LOC100294145 HCG26 BRD2 B3GALT4 AGER LY6G6D RPS18 MIR6721 CFB MICB SAPCD1-AS1 C6orf25 TNXA SAPCD1 MSH5-SAPCD1 RGL2 PHF1 ATP6V1G2-DDX39B LTB ZBTB9 RING1 HLA-DMB TAP2 SLC39A7 HLA-DQB1-AS1 SYNGAP1 SNORD48 LSM2 HLA-DOB HCG23 HSD17B8 LOC101929163 PSMB8 MIR6832 HLA-DQB1 LY6G6C GPSM3 HCG24 PSMB9 CUTA RXRB DAXX ZBTB12 NEU1 CYP21A1P RNF5 LOC100507547 LY6G6F HLA-DPB1 LY6G5B STK19 MIR4646 DDX39B-AS1 NCR3 NOTCH4 ATP6V1G2 MCCD1 MIR5004 BTNL2
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion PSMB8-AS1 C6orf10 EHMT2 SNORD52 AGPAT1 VPS52 HLA-DQA2 HLA-DRB1 MIR6834 BAG6 LST1 SNORD84 SLC44A4 ATF6B HLA-DOA COL11A2 AIF1 LY6G5C PPT2 HLA-DMA LTA DXO CLIC1 GPANK1 CYP21A2 KIFC1 HSPA1L LOC100287329 C6orf47 HSPA1B HLA-DRB5 C4A MIR6873 PRRT1 LY6G6E MIR3135B HLA-DQA1 PRRC2A PPT2-EGFL8 DDX39B CSNK2B LOC102725068 C6orf48 HLA-DQB2 PBX2 APOM VWA7 SNORD117 HCG25 C2-AS1 PPP1R2P1 VARS TAP1 HSPA1A HCP5 HLA-DPB2 MIR219A1 ABHD16A NELFE C2 ZBTB22 TAPBP MSH5 MIR1236 PFDN6 TNF C4B FKBPL NFKBIL1 DDAH2 HLA-DRA EGFL8 SKIV2L HLA-DRB6 TNXB MIR6833 WDR46 SNORA38 HLA-DPA1 LOC100294145 HCG26 BRD2 B3GALT4 AGER LY6G6D RPS18 MIR6721 CFB MICB SAPCD1-AS1 C6orf25 TNXA SAPCD1 MSH5-SAPCD1 RGL2 PHF1 ATP6V1G2-DDX39B LTB ZBTB9 RING1 HLA-DMB TAP2 SLC39A7 HLA-DQB1-AS1 SYNGAP1 SNORD48 LSM2 HLA-DOB HCG23 HSD17B8 LOC101929163 PSMB8 MIR6832 HLA-DQB1 LY6G6C GPSM3 HCG24 PSMB9 CUTA RXRB DAXX ZBTB12 NEU1 CYP21A1P RNF5 LOC100507547 LY6G6F HLA-DPB1 LY6G5B STK19 MIR4646 DDX39B-AS1 NCR3 NOTCH4 ATP6V1G2 MCCD1 MIR5004 BTNL2
nsv602832 Chr.6:33414464 - 33552444 on Build GRCh38 Loss CUTA PHF1 SYNGAP1 ZBTB9 MIR5004
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion PSMB8-AS1 MIR3135B SYNGAP1 HLA-DQA1 VPS52 HLA-DQA2 MIR6834 WDR46 HLA-DOB HSD17B8 PSMB8 HLA-DQB2 HLA-DPA1 LOC100294145 HLA-DQB1 BRD2 B3GALT4 HCG24 PSMB9 CUTA HCG25 RXRB DAXX RPS18 PPP1R2P1 HLA-DOA COL11A2 TAP1 HLA-DPB2 HLA-DMA MIR219A1 HLA-DPB1 RGL2 PHF1 ZBTB22 TAPBP KIFC1 ZBTB9 RING1 HLA-DMB MIR5004 TAP2 PFDN6 SLC39A7 HLA-DQB1-AS1 MIR6873

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