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See other AGER CNV Assays ›
Gene Symbol
AGER
Assay Reference Genome
Location

Chr.6:32183156 on build GRCh38
Cytoband
6p21.32
Assay ID Hs00467196_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 177

Gene Name:

 advanced glycosylation end product-specific receptor

Gene Aliases:

 RAGE, SCARJ1

Location:

 Chr.6:32180968-32185247 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Exon 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGER NM_001136.4 NP_001127.1
NM_001206929.1 NP_001193858.1
NM_001206932.1 NP_001193861.1
NM_001206934.1 NP_001193863.1
NM_001206936.1 NP_001193865.1
NM_001206940.1 NP_001193869.1
NM_001206954.1 NP_001193883.1
NM_001206966.1 NP_001193895.1
NM_172197.2 NP_751947.1
NR_038190.1
XM_017010328.1 XP_016865817.1
AB036432.1 BAA89369.1
AB061668.1 BAC65465.1
AB061669.1 BAC65466.1
AJ133822.1 CAB43108.1
AK298100.1
AK313178.1
AY755619.1 AAX07272.1
AY755620.1 AAX07273.1
AY755621.1 AAX07274.1
AY755622.1 AAX07275.1
AY755623.1 AAX07276.1
AY755624.1 AAX07277.1
AY755625.1 AAX07278.1
AY755626.1 AAX07279.1
AY755627.1 AAX07280.1
AY755628.1 AAX07281.1
BC020669.1 AAH20669.1
DQ104251.1
DQ104252.1
DQ104253.1
DQ104254.1
EU117141.1
EU428811.1
EU428812.1
EU428813.1
EU428814.1
EU428815.1
EU428816.1
EU826617.1
EU826618.1
EU826619.1
FJ545655.1
GU139370.1
GU139371.1
GU139372.1
GU139373.1
GU139374.1
GU139375.1
GU139376.1
GU139377.1
GU139378.1
GU139379.1
GU139380.1
GU139381.1
GU139382.1
GU139383.1
GU139384.1
HQ148133.1
HQ148134.1
HQ148135.1
KC692917.1
M91211.1 AAA03574.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss GPSM3 AGPAT1 TNXB MIR6833 EGFL8 PRRT1 MIR6721 LOC100507547 FKBPL PBX2 PPT2-EGFL8 NOTCH4 PPT2 AGER RNF5 ATF6B
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss LOC101929163 HLA-DQB1-AS1 GPSM3 TNXB HLA-DQB1 HLA-DQA2 CYP21A1P MIR3135B MIR6833 C6orf10 BTNL2 TNXA PBX2 HLA-DRB5 NOTCH4 HLA-DRA AGER RNF5 C4B HLA-DQB2 HCG23 HLA-DRB6 AGPAT1 EGFL8 PRRT1 HLA-DRB1 MIR6721 LOC100507547 FKBPL C4A PPT2-EGFL8 CYP21A2 HLA-DQA1 PPT2 ATF6B
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss HLA-DQB1-AS1 GPSM3 DXO TNXB HLA-DQB1 CYP21A1P MIR6833 C6orf10 HSPA1A NELFE PBX2 SNORD48 HLA-DRB5 SLC44A4 NEU1 SKIV2L CFB C2-AS1 HLA-DRB6 MIR1236 PRRT1 MIR6721 LOC100507547 ZBTB12 SNORD52 C4A HLA-DQA1 EHMT2 PPT2 LOC101929163 HSPA1B BTNL2 TNXA C2 NOTCH4 HLA-DRA AGER RNF5 STK19 C4B HCG23 AGPAT1 EGFL8 HLA-DRB1 FKBPL PPT2-EGFL8 C6orf48 CYP21A2 ATF6B
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss GPSM3 DXO TNXB CYP21A1P MIR6833 TNXA NELFE PBX2 C2 NOTCH4 AGER RNF5 STK19 C4B SKIV2L CFB C2-AS1 AGPAT1 MIR1236 EGFL8 PRRT1 MIR6721 LOC100507547 FKBPL C4A PPT2-EGFL8 CYP21A2 PPT2 ATF6B
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion GPANK1 LOC102725068 ATP6V1G2-DDX39B GPSM3 DXO TNXB LY6G5C C6orf47 LST1 CYP21A1P MIR6833 LTB C6orf10 HSPA1A LY6G5B NELFE DDX39B-AS1 PBX2 SNORD48 ABHD16A ATP6V1G2 LY6G6E HLA-DRB5 MIR6832 SLC44A4 DDX39B LY6G6C NEU1 CSNK2B TNF SKIV2L CFB C2-AS1 HSPA1L HLA-DRB6 SNORD84 MIR1236 PRRT1 MIR6721 LOC100507547 LOC100287329 AIF1 ZBTB12 SNORD52 C4A LY6G6D APOM EHMT2 PPT2 LOC101929163 VARS NFKBIL1 HSPA1B BTNL2 TNXA HCG26 HCP5 CLIC1 LSM2 MICB BAG6 C2 NOTCH4 HLA-DRA AGER VWA7 RNF5 MIR4646 STK19 PRRC2A C4B SNORA38 HCG23 NCR3 AGPAT1 SNORD117 EGFL8 SAPCD1 HLA-DRB1 FKBPL LTA DDAH2 C6orf25 SAPCD1-AS1 PPT2-EGFL8 LY6G6F C6orf48 CYP21A2 MSH5 MCCD1 MSH5-SAPCD1 ATF6B
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion HLA-DQB1-AS1 RING1 LOC102725068 GPSM3 DXO HCG24 TNXB LY6G5C C6orf47 LST1 CYP21A1P MIR6833 C6orf10 HSPA1A LY6G5B NELFE DDX39B-AS1 SNORD48 ABHD16A HLA-DRB5 HLA-DMA MIR6832 SLC44A4 HSD17B8 LY6G6C TNF KIFC1 SKIV2L CFB SNORD84 HLA-DPA1 PRRT1 AIF1 PSMB9 SNORD52 C4A LY6G6D APOM PPT2 VPS52 LOC101929163 VARS PSMB8-AS1 NFKBIL1 LOC100294145 HLA-DQA2 MIR219A1 HCP5 CLIC1 B3GALT4 BAG6 DAXX C2 SYNGAP1 PRRC2A BRD2 HCG25 TAP1 AGPAT1 PHF1 ZBTB9 FKBPL LTA SAPCD1-AS1 PPT2-EGFL8 LY6G6F C6orf48 MSH5-SAPCD1 ATF6B GPANK1 ATP6V1G2-DDX39B PFDN6 HLA-DOB HLA-DQB1 HLA-DOA LTB HLA-DPB1 PBX2 ATP6V1G2 LY6G6E CUTA PPP1R2P1 DDX39B PSMB8 NEU1 CSNK2B TAP2 C2-AS1 HSPA1L HLA-DRB6 MIR1236 RXRB MIR6721 LOC100507547 LOC100287329 MIR5004 ZBTB12 SLC39A7 HLA-DPB2 HLA-DQA1 EHMT2 TAPBP HSPA1B MIR6873 MIR3135B HLA-DMB RGL2 RPS18 BTNL2 TNXA HCG26 LSM2 MICB COL11A2 NOTCH4 HLA-DRA AGER VWA7 RNF5 MIR4646 STK19 C4B SNORA38 HLA-DQB2 HCG23 WDR46 NCR3 SNORD117 EGFL8 SAPCD1 HLA-DRB1 MIR6834 DDAH2 C6orf25 CYP21A2 MSH5 MCCD1 ZBTB22
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss GPSM3 AGPAT1 TNXB MIR6833 EGFL8 PRRT1 MIR6721 LOC100507547 FKBPL PBX2 PPT2-EGFL8 NOTCH4 PPT2 AGER RNF5 ATF6B
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion HLA-DQB1-AS1 RING1 LOC102725068 GPSM3 DXO HCG24 TNXB LY6G5C C6orf47 LST1 CYP21A1P MIR6833 C6orf10 HSPA1A LY6G5B NELFE DDX39B-AS1 SNORD48 ABHD16A HLA-DRB5 HLA-DMA MIR6832 SLC44A4 HSD17B8 LY6G6C TNF KIFC1 SKIV2L CFB SNORD84 HLA-DPA1 PRRT1 AIF1 PSMB9 SNORD52 C4A LY6G6D APOM PPT2 VPS52 LOC101929163 VARS PSMB8-AS1 NFKBIL1 LOC100294145 HLA-DQA2 MIR219A1 HCP5 CLIC1 B3GALT4 BAG6 DAXX C2 SYNGAP1 PRRC2A BRD2 HCG25 TAP1 AGPAT1 PHF1 ZBTB9 FKBPL LTA SAPCD1-AS1 PPT2-EGFL8 LY6G6F C6orf48 MSH5-SAPCD1 ATF6B GPANK1 ATP6V1G2-DDX39B PFDN6 HLA-DOB HLA-DQB1 HLA-DOA LTB HLA-DPB1 PBX2 ATP6V1G2 LY6G6E CUTA PPP1R2P1 DDX39B PSMB8 NEU1 CSNK2B TAP2 C2-AS1 HSPA1L HLA-DRB6 MIR1236 RXRB MIR6721 LOC100507547 LOC100287329 MIR5004 ZBTB12 SLC39A7 HLA-DPB2 HLA-DQA1 EHMT2 TAPBP HSPA1B MIR6873 MIR3135B HLA-DMB RGL2 RPS18 BTNL2 TNXA HCG26 LSM2 MICB COL11A2 NOTCH4 HLA-DRA AGER VWA7 RNF5 MIR4646 STK19 C4B SNORA38 HLA-DQB2 HCG23 WDR46 NCR3 SNORD117 EGFL8 SAPCD1 HLA-DRB1 MIR6834 DDAH2 C6orf25 CYP21A2 MSH5 MCCD1 ZBTB22
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss GPANK1 LOC102725068 ATP6V1G2-DDX39B GPSM3 DXO TNXB LY6G5C C6orf47 LST1 CYP21A1P MIR6833 LTB C6orf10 HSPA1A LY6G5B NELFE DDX39B-AS1 PBX2 MICA SNORD48 ABHD16A ATP6V1G2 LY6G6E MIR6832 SLC44A4 DDX39B LY6G6C NEU1 CSNK2B TNF SKIV2L CFB C2-AS1 HSPA1L SNORD84 MIR1236 PRRT1 MIR6721 LOC100507547 LOC100287329 AIF1 ZBTB12 SNORD52 C4A LY6G6D APOM EHMT2 PPT2 LOC101929163 VARS NFKBIL1 HSPA1B BTNL2 TNXA HLA-B HCG26 HCP5 CLIC1 LSM2 MICB BAG6 C2 NOTCH4 HLA-DRA AGER VWA7 RNF5 MIR4646 STK19 PRRC2A C4B SNORA38 HCG23 NCR3 MIR6891 AGPAT1 SNORD117 EGFL8 SAPCD1 FKBPL LTA DDAH2 C6orf25 SAPCD1-AS1 PPT2-EGFL8 LY6G6F C6orf48 CYP21A2 MSH5 MCCD1 MSH5-SAPCD1 ATF6B

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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