Hs00470560_cn

• Gene Symbol: TRIM46
• Assay Reference Genome Location: Chr.1:155182009 on build GRCh38
• Cytoband: 1q22

Target Gene Details

• Entrez Gene ID: 80128
• Gene Name: tripartite motif containing 46
• Gene Aliases: GENEY, TRIFIC
• Location: Chr.1:155173714-155184971 on Build GRCh38
• Assay Gene Location: Within Exon 14

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TRIM46	NM_001256599.1	9	1936	NP_001243528.1
	NM_001256600.1	10	1880	NP_001243529.1
	NM_001256601.1	9	1767	NP_001243530.1
	NM_001282378.1	8	1664	NP_001269307.1
	NM_025058.4	9	1926	NP_079334.3
	NR_046327.1	10	1964
	NR_046329.1	11	2023
	XM_011510002.1	10	1869	XP_011508304.1
	XM_017002393.1	10	2040	XP_016857882.1
	AK096158.1	9	1814
	AK128139.1	11	2023	BAC87293.1
	AK296300.1	10	1876
	AK297318.1	8	1572
	AK304542.1
	AK308075.1	9	1731
	AK309699.1	9	1767
	AY251386.1	9	1746	AAP51206.1
	BC126372.1	10	1881

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv527682	Chr.1:155177242 - 155227671 on Build GRCh38	Gain	THBS3 MUC1 GBAP1 MIR92B MTX1 TRIM46
nsv470741	Chr.1:155142784 - 155260340 on Build GRCh38	Loss	THBS3 GBA KRTCAP2 MUC1 GBAP1 MIR92B MTX1 TRIM46 FAM189B SCAMP3
nsv8447	Chr.1:155172153 - 155184461 on Build GRCh38	Gain	KRTCAP2 TRIM46
nsv1010146	Chr.1:155146620 - 155231273 on Build GRCh38	Gain	THBS3 KRTCAP2 MUC1 GBAP1 MIR92B MTX1 TRIM46
nsv547961	Chr.1:155109822 - 155225189 on Build GRCh38	Loss	THBS3 SLC50A1 KRTCAP2 MUC1 GBAP1 MIR92B DPM3 MTX1 EFNA1 TRIM46
dgv3n68	Chr.1:155122502 - 155343618 on Build GRCh38	Loss	GBA KRTCAP2 MUC1 HCN3 CLK2 ASH1L FAM189B SCAMP3 THBS3 SLC50A1 PKLR RUSC1 GBAP1 RUSC1-AS1 FDPS MIR92B DPM3 MTX1 LOC105371451 EFNA1 TRIM46

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

ubiquitin-protein ligase

Gene Ontology Categories:

Function(s)

zinc ion binding