Hs00481343_cn

• Gene Symbol: ST6GALNAC1
• Assay Reference Genome Location: Chr.17:76626805 on build GRCh38
• Cytoband: 17q25.1

Target Gene Details

• Entrez Gene ID: 55808
• Gene Name: ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
• Gene Aliases: HSY11339, SIAT7A, ST6GalNAcI, STYI
• Location: Chr.17:76617769-76643838 on Build GRCh38
• Assay Gene Location: Overlaps Intron 5 - Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ST6GALNAC1	NM_001289107.1			NP_001276036.1
	NM_018414.4			NP_060884.1
	NR_110309.1
	XM_011524995.2			XP_011523297.1
	XM_011524996.2			XP_011523298.1
	XM_017024842.1			XP_016880331.1
	XM_017024843.1			XP_016880332.1
	XM_017024844.1			XP_016880333.1
	AK000113.1			BAA90953.1
	AY096001.1			AAM22800.1
	AY358918.1			AAQ89277.1
	BC022462.1			AAH22462.1
	Y11339.2			CAA72179.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1060182	Chr.17:76597910 - 76660156 on Build GRCh38	Gain	ST6GALNAC1
nsv518385	Chr.17:76597821 - 76661078 on Build GRCh38	Gain	ST6GALNAC1
nsv1058486	Chr.17:76592348 - 76634542 on Build GRCh38	Gain	ST6GALNAC1

More Information

Additional Information:

For this assay, SNP(s) [rs146196748] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

ganglioside biosynthetic process
protein glycosylation
oligosaccharide metabolic process
oligosaccharide biosynthetic process
protein N-linked glycosylation via asparagine
sialylation

Function(s)

alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity
sialyltransferase activity