Hs00490121_cn

• Gene Symbol: PTPN7
• Assay Reference Genome Location: Chr.1:202147546 on build GRCh38
• Cytoband: 1q32.1

Target Gene Details

• Entrez Gene ID: 5778
• Gene Name: protein tyrosine phosphatase, non-receptor type 7
• Gene Aliases: BPTP-4, HEPTP, LC-PTP, LPTP, PTPNI
• Location: Chr.1:202147012-202161588 on Build GRCh38
• Assay Gene Location: Within Exon 11

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PTPN7	NM_001199797.1	10	2393	NP_001186726.1
	NM_002832.3	10	3239	NP_002823.3
	NM_080588.2	9	2732	NP_542155.1
	NR_037663.1	10	3186
	NR_037664.1	9	3055
	XM_011509819.1	11	2712	XP_011508121.1
	XM_011509820.2	11	2416	XP_011508122.1
	XM_011509821.1	11	2344	XP_011508123.1
	XM_011509822.2	11	2215	XP_011508124.1
	XM_011509824.1	10	2220	XP_011508126.1
	XM_017001935.1	11	2709	XP_016857424.1
	XM_017001936.1	10	2571	XP_016857425.1
	XM_017001937.1	10	2389	XP_016857426.1
	AK127214.1	10	3232
	BC001746.1	9	2732	AAH01746.2
	D11327.1	11	2160	BAA01946.1
	M64322.1	10	2235	AAA59531.1

More Information

Additional Information:

For this assay, SNP(s) [rs115477816] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, non-DGV Variation

Gene Ontology Categories:

Process(es)

protein dephosphorylation
peptidyl-tyrosine dephosphorylation

Function(s)

protein tyrosine phosphatase activity
protein binding