Hs00505782_cn

• Gene Symbol: VPS39
• Assay Reference Genome Location: Chr.15:42159291 on build GRCh38
• Cytoband: 15q15.1

Target Gene Details

• Entrez Gene ID: 23339
• Gene Name: VPS39, HOPS complex subunit
• Gene Aliases: TLP, VAM6, hVam6p
• Location: Chr.15:42158701-42208331 on Build GRCh38
• Assay Gene Location: Within Exon 27

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VPS39	NM_001301138.1	26	4297	NP_001288067.1
	NM_015289.3	25	4264	NP_056104.2
	XM_011521403.2	26	4336	XP_011519705.1
	XM_011521404.2	25	4339	XP_011519706.1
	XM_017022038.1	25	4452	XP_016877527.1
	XM_017022039.1	25	4263	XP_016877528.1
	AB018313.2	25	4215
	AF281052.1	25	4234	AAQ05978.1
	AK025334.1	10	2464
	AK074193.1	1	756
	AK124255.1	1	2257
	AK128403.1	8	3586
	AL117456.1	1	1351
	BC015817.2	21	3824	AAH15817.2
	BX537404.1	25	4243	CAD97646.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv9245	Chr.15:42149651 - 42161374 on Build GRCh38	Gain	PLA2G4F VPS39
nsv952614	Chr.15:42139503 - 42164202 on Build GRCh38	Deletion	PLA2G4F VPS39
nsv471683	Chr.15:42042177 - 42210784 on Build GRCh38	Gain+Loss	PLA2G4D MIR627 PLA2G4E PLA2G4F VPS39 TMEM87A
nsv832985	Chr.15:42079284 - 42272768 on Build GRCh38	Loss	PLA2G4D MIR627 PLA2G4F VPS39 TMEM87A

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

intracellular protein transport
autophagy
endosome to lysosome transport
endosomal vesicle fusion
vacuole fusion
late endosome to lysosome transport
retrograde transport, endosome to plasma membrane