Genomic Map
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Target Gene Details
Entrez Gene ID: | 22809 |
Gene Name: | activating transcription factor 5 |
Gene Aliases: |
ATFX, HMFN0395 |
Location: |
Chr.19:49928702-49933936 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 2 - Intron 2 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| ATF5 | NM_001193646.1 | NP_001180575.1 | ||
| NM_012068.5 | NP_036200.2 | |||
| AB021663.2 | BAA78477.2 | |||
| AB073613.1 | BAD38650.1 | |||
| AK024402.1 | ||||
| AK091985.1 | 1 | 180 | ||
| AK290592.1 | ||||
| BC005174.2 | AAH05174.1 | |||
| BF528888.1 | ||||
| BM462249.1 | ||||
| BP378116.1 | ||||
| BU187153.1 | ||||
| DA251296.1 | ||||
| DA684664.1 |
Target Gene Details
Entrez Gene ID: | 259307 |
Gene Name: | interleukin 4 induced 1 |
Gene Aliases: |
FIG1, LAAO, LAO |
Location: |
Chr.19:49889654-49929539 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| IL4I1 | NM_001258017.1 | NP_001244946.1 | ||
| NM_001258018.1 | 1 | 159 | NP_001244947.1 | |
| NM_172374.2 | 1 | 159 | NP_758962.1 | |
| NR_047577.1 | 1 | 159 | ||
| AJ880386.1 | CAI54291.1 | |||
| AJ880387.1 | CAI54292.1 | |||
| AJ880388.1 | 1 | 73 | CAI54293.1 | |
| AJ880389.1 | ||||
| BC131625.1 | ||||
| BQ672052.1 | 1 | 125 | ||
| DQ079587.1 | 1 | 159 | AAZ32711.1 | |
| DQ079588.1 | 1 | 159 | AAZ32712.1 | |
| DQ079589.1 | AAZ32713.1 |
Target Gene Details
Entrez Gene ID: | 23636 |
Gene Name: | nucleoporin 62 |
Gene Aliases: |
IBSN, SNDI, p62 |
Location: |
Chr.19:49906825-49929731 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| NUP62 | NM_001193357.1 | NP_001180286.1 | ||
| NM_012346.4 | NP_036478.2 | |||
| NM_016553.4 | 1 | 351 | NP_057637.2 | |
| NM_153718.3 | 1 | 151 | NP_714940.1 | |
| NM_153719.3 | 1 | 151 | NP_714941.1 | |
| AK000829.1 | 1 | 121 | ||
| AK125857.1 | 1 | 125 | ||
| AK225817.1 | 1 | 95 | ||
| AL162061.1 | 1 | 73 | CAB82399.1 | |
| BC003663.2 | AAH03663.1 | |||
| BC050717.2 | 1 | 74 | AAH50717.1 | |
| BC095410.1 | 1 | 110 | AAH95410.1 | |
| BC101104.1 | 1 | 63 | AAI01105.1 | |
| BC101105.1 | 1 | 63 | AAI01106.1 | |
| BC101106.1 | AAI01107.1 | |||
| BC101107.1 | 1 | 63 | AAI01108.1 | |
| CB961185.1 | 1 | 176 | ||
| DA438104.1 | 1 | 151 | ||
| DA856902.1 | ||||
| DA945913.1 | 1 | 151 | ||
| DA949331.1 | 1 | 351 | ||
| DB076767.1 | ||||
| X58521.1 | CAA41411.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
 RPS11
ALDH16A1
CARD8
PLA2G4C
SNAR-C3
SNAR-A1
SULT2B1
SNAR-G1
CCDC155
SNAR-C2
PTH2
SPACA4
SNAR-A4
SNAR-A11
SCAF1
DKKL1
ZNF114
CPT1C
TRPM4
CGB2
BAX
FUZ
LIN7B
IZUMO1
NTN5
SNRNP70
CGB3
SNAR-A14
LHB
BSPH1
SNAR-A3
CGB7
KCNA7
MIR6800
PNKP
VRK3
SNAR-C4
RRAS
NUCB1
SLC17A7
MIR150
MIR5088
NOSIP
SNAR-A10
SYNGR4
GFY
CABP5
PRR12
MAMSTR
DBP
CARD8-AS1
PPP1R15A
IRF3
MIR4324
SNORD35A
MIR6798
FCGRT
GYS1
PLEKHA4
LOC101928295
SNORD33
CGB1
CGB5
HRC
TULP2
SNAR-A5
FAM83E
TEAD2
BCL2L12
AP2A1
TMEM143
FUT1
SNAR-A6
SNORD35B
ZNF473
GRWD1
LOC100287477
SNAR-A8
MED25
KCNJ14
TBC1D17
PRMT1
SEC1P
PTOV1
FTL
CGB8
RASIP1
SPHK2
BCAT2
PTOV1-AS2
MIR4751
SNAR-A9
TSKS
CA11
PLA2G4C-AS1
C19orf73
C19orf68
PRRG2
FLT3LG
LOC105372430
SNAR-A13
NUCB1-AS1
ADM5
LOC105447645
PIH1D1
RUVBL2
SNAR-C1
AKT1S1
SNORD32A
SNORD34
RPL18
CD37
SLC6A16
LIG1
EMP3
SNAR-A12
LMTK3
DHDH
SNAR-G2
SNAR-C5
CCDC114
SIGLEC16
SNAR-B2
LOC101059948
NTF4
MIR6799
FGF21
SNAR-B1
HSD17B14
NUP62
PTOV1-AS1
PPFIA3
KDELR1
SNAR-A7
RCN3
SIGLEC11
RPL13A
MIR4750
GRIN2D
FLJ26850
SNAR-D
ELSPBP1
IL4I1
MIR4749
ATF5
SNAR-A2
CYTH2
FUT2
|
| nsv1065648 | Chr.19:49924738 - 50001154 on Build GRCh38 | Gain |
SIGLEC16
NUP62
IL4I1
SIGLEC11
VRK3
ATF5
MIR4751
|
| dgv53n68 | Chr.19:49724393 - 49943224 on Build GRCh38 | Loss |
FUZ
PTOV1
MIR4750
MIR6799
AP2A1
PTOV1-AS2
MIR4751
NUP62
PTOV1-AS1
IL4I1
MIR6800
AKT1S1
TSKS
PNKP
MED25
MIR4749
ATF5
TBC1D17
|
| nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion |
PRMT1
RRAS
PTOV1
MIR5088
MIR6799
NOSIP
PTOV1-AS2
MIR4751
PRR12
NUP62
PTOV1-AS1
IRF3
SCAF1
TSKS
CPT1C
PRRG2
FUZ
MIR4750
ADM5
BCL2L12
AP2A1
IL4I1
MIR6800
AKT1S1
PNKP
MED25
MIR4749
ATF5
TBC1D17
|
| nsv579910 | Chr.19:49915478 - 49957657 on Build GRCh38 | Gain |
NUP62
IL4I1
SIGLEC11
ATF5
MIR4751
|
| esv3644630 | Chr.19:49877826 - 50039767 on Build GRCh38 | Gain |
ZNF473
SIGLEC16
NUP62
IL4I1
SIGLEC11
AKT1S1
MIR4750
VRK3
ATF5
TBC1D17
MIR4751
|
| dgv54n68 | Chr.19:49848512 - 50008788 on Build GRCh38 | Loss |
SIGLEC16
PTOV1
SIGLEC11
MIR4750
PTOV1-AS2
MIR4751
NUP62
PTOV1-AS1
IL4I1
AKT1S1
PNKP
MIR4749
VRK3
ATF5
TBC1D17
|
| nsv1058623 | Chr.19:49918762 - 49966847 on Build GRCh38 | Gain |
NUP62
IL4I1
SIGLEC11
ATF5
MIR4751
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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