Hs00550903_cn

• Gene Symbol: C9orf173-AS1
• Assay Reference Genome Location: Chr.9:137251748 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 100129722
• Gene Name: C9orf173 antisense RNA 1
• Gene Aliases: -
• Location: Chr.9:137250219-137253497 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf173-AS1	NR_038389.1
	AK097764.1

Target Gene Details

• Entrez Gene ID: 441476
• Gene Name: sperm-tail PG-rich repeat containing 3
• Gene Aliases: C9orf173
• Location: Chr.9:137250840-137253483 on Build GRCh38
• Assay Gene Location: Overlaps Intron 2 - Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
STPG3	NM_001004353.3			NP_001004353.2
	NM_001256699.1			NP_001243628.1
	NM_001256700.1			NP_001243629.1
	NM_001256701.1			NP_001243630.1
	NR_046339.1
	NR_046340.1
	XM_006717113.2			XP_006717176.1
	XM_006717115.2			XP_006717178.1
	AK097565.1			BAC05104.1
	BC033939.1			AAH33939.2
	BC132726.1
	BC144308.2
	BC144311.1
	BC144314.1
	DB453255.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13009n54	Chr.9:137173890 - 137327859 on Build GRCh38	Loss	STPG3 TPRN TOR4A NELFB RNF208 NDOR1 RNF224 C9orf173-AS1 SLC34A3 NRARP CYSRT1 EXD3 TUBB4B SSNA1 FAM166A ANAPC2 TMEM203
dgv13011n54	Chr.9:137223996 - 137338927 on Build GRCh38	Loss	STPG3 NRARP CYSRT1 EXD3 TUBB4B TOR4A NELFB FAM166A RNF224 C9orf173-AS1 SLC34A3
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	STPG3 C9orf139 EDF1 RABL6 TOR4A NELFB C9orf173-AS1 LCNL1 TRAF2 LOC101930307 MAN1B1 MIR4479 MAN1B1-AS1 DPP7 TUBB4B CLIC3 SSNA1 FUT7 MIR4292 ANAPC2 NPDC1 SAPCD2 ENTPD8 TPRN ENTPD2 MAMDC4 PHPT1 NDOR1 RNF224 MIR7114 LRRC26 NRARP CCDC183 TMEM203 GRIN1 NSMF LCN12 RNF208 MIR3621 PNPLA7 NOXA1 PTGDS C8G C9orf142 FBXW5 ABCA2 PRR31 C9orf172 SLC34A3 CYSRT1 EXD3 TMEM210 FAM166A UAP1L1 CCDC183-AS1
nsv951207	Chr.9:137136949 - 137379148 on Build GRCh38	Deletion	STPG3 TPRN TOR4A NELFB RNF208 NDOR1 RNF224 MIR3621 C9orf173-AS1 SLC34A3 LRRC26 NRARP CYSRT1 EXD3 TUBB4B SSNA1 TMEM210 FAM166A ANAPC2 TMEM203 GRIN1
nsv1161918	Chr.9:137118319 - 137438026 on Build GRCh38	Duplication	STPG3 ENTPD8 TPRN TOR4A NELFB RNF208 NDOR1 RNF224 MIR3621 C9orf173-AS1 SLC34A3 LRRC26 NOXA1 NRARP CYSRT1 EXD3 TUBB4B SSNA1 TMEM210 FAM166A ANAPC2 TMEM203 GRIN1
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	STPG3 AGPAT2 C9orf139 EDF1 LCN15 RABL6 TOR4A NELFB C9orf173-AS1 LCNL1 TRAF2 LOC101930307 MAN1B1 MIR4479 MAN1B1-AS1 HSPC324 DPP7 TUBB4B CLIC3 SSNA1 FUT7 MIR4292 ANAPC2 NPDC1 SAPCD2 LINC01451 TPRN TMEM141 ENTPD2 MAMDC4 PHPT1 LOC100128593 NDOR1 RNF224 LCN10 LRRC26 NRARP EGFL7 CCDC183 TMEM203 GRIN1 LCN12 RNF208 MIR3621 PTGDS C8G FAM69B C9orf142 FBXW5 ABCA2 SNORA17B MIR126 PRR31 C9orf172 SLC34A3 LCN8 CYSRT1 SNHG7 EXD3 TMEM210 SNORA17A FAM166A UAP1L1 CCDC183-AS1 MIR6722 LCN6

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

structural protein