Hs00553462_cn

• Gene Symbol: SNAI3
• Assay Reference Genome Location: Chr.16:88678541 on build GRCh38
• Cytoband: 16q24.2

Target Gene Details

• Entrez Gene ID: 333929
• Gene Name: snail family transcriptional repressor 3
• Gene Aliases: SMUC, SNAIL3, ZNF293, Zfp293
• Location: Chr.16:88677682-88686474 on Build GRCh38
• Assay Gene Location: Within Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3	NM_178310.3	3	854	NP_840101.1
	BC041461.1	3	761	AAH41461.1
	BC107058.2	3	854	AAI07059.1

Target Gene Details

• Entrez Gene ID: 197187
• Gene Name: SNAI3 antisense RNA 1
• Gene Aliases: -
• Location: Chr.16:88663373-88687186 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3-AS1	NR_024399.1
	BX640980.1	6	3647

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	LOC339059 MVD MIR4722 SNAI3-AS1 PIEZO1 RNF166 CYBA CTU2 LOC100289580 SNAI3
nsv1065973	Chr.16:88661146 - 88731220 on Build GRCh38	Loss	MVD MIR4722 SNAI3-AS1 PIEZO1 RNF166 CTU2 LOC100289580 SNAI3
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	LOC339059 MIR4722 SNAI3-AS1 PIEZO1 RNF166 CTU2 LOC100289580 SNAI3
nsv833325	Chr.16:88553738 - 88698194 on Build GRCh38	Loss	ZC3H18-AS1 IL17C MVD SNAI3-AS1 RNF166 ZC3H18 CYBA SNAI3
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	ZC3H18-AS1 ZNF469 MVD SNAI3-AS1 CTU2 LOC107984862 LOC100289580 SNAI3 LOC339059 IL17C MIR5189 MIR4722 PIEZO1 RNF166 ZC3H18 CYBA ZFPM1
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	GAS8 MVD SPATA33 LOC101927817 CDT1 IL17C LOC100129697 SPATA2L PIEZO1 CBFA2T3 VPS9D1-AS1 MC1R LOC100287036 URAHP FAM157C CTU2 LOC100289580 SPIRE2 SNAI3 LOC107987238 SNORD68 PABPN1L SPG7 CYBA FANCA TUBB8P7 PRDM7 LINC00304 ZNF778 VPS9D1 SNAI3-AS1 LOC107984817 CENPBD1 AFG3L1P LOC339059 LOC105371414 MIR4722 RNF166 CDK10 SLC22A31 CPNE7 RPL13 LOC101927793 TRAPPC2L TCF25 LOC105371419 LOC400558 DBNDD1 ANKRD11 GALNS DPEP1 GAS8-AS1 ZNF276 CHMP1A TUBB3 CDH15 APRT ACSF3 LOC105371409 DEF8
nsv819188	Chr.16:88672556 - 88694874 on Build GRCh38	Gain	SNAI3-AS1 SNAI3

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
copper ion binding