Hs00554929_cn

• Gene Symbol: BAIAP3
• Assay Reference Genome Location: Chr.16:1341401 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 8938
• Gene Name: BAI1 associated protein 3
• Gene Aliases: BAP3
• Location: Chr.16:1333605-1349441 on Build GRCh38
• Assay Gene Location: Within Exon 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
BAIAP3	NM_001199096.1	8	856	NP_001186025.1
	NM_001199097.1	8	798	NP_001186026.1
	NM_001199098.1	8	729	NP_001186027.1
	NM_001199099.1	8	714	NP_001186028.1
	NM_001286464.1	8	849	NP_001273393.1
	NM_003933.4	8	906	NP_003924.2
	XM_011522728.1	8	1452	XP_011521030.1
	XM_011522729.1	8	1452	XP_011521031.1
	XM_011522730.2	8	1452	XP_011521032.1
	AB018277.2	8	758
	AK294491.1	8	957
	AK294744.1	8	674
	AK295645.1	8	688
	AK299309.1	8	758
	AK299358.1	8	856
	AK315059.1	8	906
	AL834321.1	8	800	CAH56376.1
	BC104966.1	8	769	AAI04967.1
	BC112129.1	8	781	AAI12130.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2762143	Chr.16:1270592 - 1519404 on Build GRCh38	Gain	TSR3 CLCN7 BAIAP3 UBE2I UNKL TELO2 GNPTG LOC105371045 IFT140 PTX4 C16orf91 CCDC154
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	KCTD5 POLR3K METTL26 MAPK8IP3 LOC105371184 FAM173A HAGHL DDX11L10 MIR1225 TPSG1 UBE2I IGFALS UNKL WFIKKN1 MIR4516 DECR2 NTN3 SSTR5 PIGQ SYNGR3 JMJD8 HAGH MSRB1 LOC105371045 MIR662 CRAMP1 LOC105371047 PRR35 ABCA17P NTHL1 LOC107987233 DNASE1L2 NARFL MRPL28 SNORA78 WDR24 PTX4 CEMP1 MIR3177 TPSD1 RPUSD1 RPL3L PKD1 SPSB3 MIR3180-5 RAB26 SNORA64 RPL23AP5 C16orf59 STUB1 ABCA3 PDIA2 HS3ST6 HBA2 LOC107984876 WASIR2 LOC729652 RPS2 ERVK13-1 HBZ MIR4717 MIR3178 TSR3 MIR3176 SOX8 LMF1-AS1 MPG SNRNP25 FBXL16 LINC00235 TMEM8A ATP6V0C FAHD1 NHLRC4 MIR3677 HBA1 RAB40C LOC100134368 SNORA10 HBM MIR6859-4 NOXO1 SLC9A3R2 CHTF18 TPSB2 PRSS27 NME4 HBQ1 CAPN15 METRN PRSS29P NPRL3 GFER LOC100287175 BRICD5 MIR6768 RGS11 TSC2 TPSAB1 RAB11FIP3 RHOT2 MLST8 GNG13 NDUFB10 LMF1 LINC00254 IFT140 MIR6511B1 RHBDL1 ARHGDIG LOC101929280 WDR90 NPW MCRIP2 RHBDF1 FLJ42627 FAM234A MEIOB CCDC154 SSTR5-AS1 NUBP2 PRR25 CASKIN1 PGP C1QTNF8 BAIAP3 TMEM204 AXIN1 RNF151 GNPTG MIR5587 RNPS1 LUC7L ECI1 TBL3 LOC105371038 MSLN TELO2 ZNF598 AMDHD2 C16orf91 MRPS34 EME2 PDPK1 LOC105371046 LOC106660606 CCDC78 SNHG9 HN1L SNORD60 SNHG19 CCNF NME3 LOC105371049 CACNA1H CLCN7 MIR6767 LOC652276 TRAF7 TBC1D24 MIR940 E4F1
nsv974746	Chr.16:1328043 - 1351866 on Build GRCh38	Duplication	TSR3 BAIAP3
nsv471066	Chr.16:893361 - 1482836 on Build GRCh38	Loss	SSTR5-AS1 SSTR5 TSR3 TPSD1 C1QTNF8 BAIAP3 TPSB2 SOX8 LMF1-AS1 LMF1 GNPTG LOC105371045 CACNA1H CLCN7 PRSS29P TPSG1 UBE2I LOC107984876 UNKL C16orf91 CCDC154 TPSAB1
dgv2692n100	Chr.16:1002943 - 1394728 on Build GRCh38	Gain	SSTR5-AS1 SSTR5 TSR3 TPSD1 C1QTNF8 BAIAP3 TPSB2 GNPTG CACNA1H PRSS29P TPSG1 UBE2I UNKL TPSAB1
nsv428316	Chr.16:929650 - 1363252 on Build GRCh38	Gain+Loss	SSTR5-AS1 SSTR5 TSR3 TPSD1 C1QTNF8 BAIAP3 TPSB2 SOX8 LMF1-AS1 LMF1 GNPTG CACNA1H PRSS29P TPSG1 UBE2I UNKL TPSAB1
nsv952899	Chr.16:1142501 - 1535899 on Build GRCh38	Deletion	TSR3 TPSD1 BAIAP3 TMEM204 TPSB2 GNPTG LOC105371045 IFT140 LOC105371047 CACNA1H CLCN7 PRSS29P TPSG1 UBE2I UNKL TELO2 PTX4 C16orf91 CCDC154 TPSAB1
nsv1046314	Chr.16:1238517 - 1426464 on Build GRCh38	Loss	TSR3 TPSD1 BAIAP3 PRSS29P UBE2I UNKL GNPTG C16orf91 TPSAB1

More Information

Additional Information:

For this assay, SNP(s) [rs75271587] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

G-protein coupled receptor signaling pathway
neurotransmitter secretion

Function(s)

protein C-terminus binding