Hs00586149_cn

• Gene Symbol: RPL3L
• Assay Reference Genome Location: Chr.16:1946635 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 6123
• Gene Name: ribosomal protein L3 like
• Gene Aliases: -
• Location: Chr.16:1944571-1955123 on Build GRCh38
• Assay Gene Location: Overlaps Intron 7 - Exon 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
RPL3L	NM_005061.2			NP_005052.1
	XM_011522571.2			XP_011520873.1
	AK313162.1
	BC050413.1			AAH50413.1
	U65581.1			AAC50777.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	MIR6768 NME4 NME3 TBC1D24 LOC106660606 C16orf59 RPS2 MRPL28 E4F1 CEMP1 PKD1 SNHG9 SYNGR3 HBQ1 MIR1225 RAB40C MIR6511B1 HAGH CRAMP1 ZNF598 TRAF7 TPSAB1 RPL23AP5 SPSB3 RAB11FIP3 SNHG19 LINC00254 POLR3K ARHGDIG FAHD1 WASIR2 DNASE1L2 MIR3677 CAPN15 SLC9A3R2 MIR5587 KCTD5 LOC652276 MRPS34 FLJ42627 BRICD5 MIR6767 TELO2 NPRL3 RNF151 TPSG1 MIR4516 ABCA3 PRSS29P CASKIN1 MSLN LOC105371045 RPUSD1 RNPS1 WDR24 MPG MAPK8IP3 MIR4717 C1QTNF8 SOX8 NPW PRR25 FAM173A ECI1 LOC105371046 LOC101929280 TMEM204 HBZ CCDC78 CHTF18 SNRNP25 LOC100287175 IGFALS ATP6V0C DECR2 HN1L MIR3176 LINC00235 LOC105371049 UNKL PGP CCNF LOC100134368 NHLRC4 MEIOB BAIAP3 AXIN1 LMF1-AS1 METRN JMJD8 NOXO1 STUB1 PTX4 LOC107987233 LMF1 MLST8 PIGQ FAM234A WDR90 HBA1 CACNA1H ABCA17P RHBDL1 TPSD1 MIR3180-5 LOC105371184 MIR6859-4 HBM GFER TSR3 GNPTG PDIA2 RGS11 NUBP2 LOC105371047 DDX11L10 PDPK1 MIR662 FBXL16 HS3ST6 CLCN7 TBL3 LOC105371038 MCRIP2 AMDHD2 METTL26 UBE2I RAB26 PRR35 SSTR5-AS1 HAGHL SNORA10 SNORD60 EME2 HBA2 MIR3177 MIR3178 MIR940 SNORA64 ERVK13-1 TMEM8A NDUFB10 PRSS27 NTHL1 SSTR5 LUC7L GNG13 RPL3L LOC107984876 MSRB1 WFIKKN1 LOC729652 IFT140 TPSB2 RHBDF1 C16orf91 TSC2 SNORA78 CCDC154 NARFL RHOT2 NTN3
nsv952901	Chr.16:1888800 - 2135899 on Build GRCh38	Deletion	TBL3 NTHL1 SLC9A3R2 RPL3L MSRB1 RPS2 GFER NOXO1 PKD1 SNHG9 SYNGR3 MIR1225 SNORA10 MIR6511B1 RNF151 LOC105371049 MIR4516 ZNF598 NPW TSC2 SNORA78 SNORA64 HS3ST6 NDUFB10
nsv833120	Chr.16:1893102 - 1980660 on Build GRCh38	Loss	TBL3 SNORA10 RNF151 RPL3L MSRB1 RPS2 SNORA78 NOXO1 SNORA64 HS3ST6 NDUFB10 SNHG9
nsv519366	Chr.16:1851210 - 1961125 on Build GRCh38	Loss	MEIOB RPL3L MSRB1 HS3ST6 LINC00254 NDUFB10
nsv571178	Chr.16:1919082 - 1961125 on Build GRCh38	Loss	RPL3L MSRB1 HS3ST6 NDUFB10

More Information

Additional Information:

For this assay, SNP(s) [rs74930354] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

ribosomal protein

Gene Ontology Categories:

Process(es)

ribosomal large subunit assembly
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
rRNA processing
translation
translational initiation
SRP-dependent cotranslational protein targeting to membrane
viral transcription

Function(s)

RNA binding
structural constituent of ribosome