Hs00593888_cn

• Gene Symbol: C9orf173-AS1
• Assay Reference Genome Location: Chr.9:137253491 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 100129722
• Gene Name: C9orf173 antisense RNA 1
• Gene Aliases: -
• Location: Chr.9:137250219-137253497 on Build GRCh38
• Assay Gene Location: Overlaps - Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf173-AS1	NR_038389.1
	AK097764.1

Target Gene Details

• Entrez Gene ID: 441476
• Gene Name: sperm-tail PG-rich repeat containing 3
• Gene Aliases: C9orf173
• Location: Chr.9:137250840-137253483 on Build GRCh38
• Assay Gene Location: Overlaps - Exon 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
STPG3	NM_001004353.3			NP_001004353.2
	NM_001256699.1			NP_001243628.1
	NM_001256700.1			NP_001243629.1
	NM_001256701.1			NP_001243630.1
	NR_046339.1
	NR_046340.1
	XM_006717113.2			XP_006717176.1
	XM_006717115.2			XP_006717178.1
	AK097565.1			BAC05104.1
	BC033939.1			AAH33939.2
	BC132726.1
	BC144308.2
	BC144311.1
	BC144314.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13009n54	Chr.9:137173890 - 137327859 on Build GRCh38	Loss	NRARP EXD3 TOR4A CYSRT1 SSNA1 TMEM203 STPG3 NDOR1 NELFB TUBB4B SLC34A3 FAM166A RNF224 C9orf173-AS1 TPRN RNF208 ANAPC2
dgv13011n54	Chr.9:137223996 - 137338927 on Build GRCh38	Loss	SLC34A3 NRARP FAM166A EXD3 TOR4A CYSRT1 RNF224 STPG3 C9orf173-AS1 NELFB TUBB4B
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	TOR4A LRRC26 SSNA1 TMEM203 ENTPD8 MIR7114 PRR31 ANAPC2 NRARP CYSRT1 STPG3 CCDC183-AS1 RABL6 NDOR1 CCDC183 FAM166A MAN1B1 FBXW5 LCN12 C8G MAMDC4 LOC101930307 PNPLA7 PTGDS SAPCD2 UAP1L1 FUT7 C9orf172 C9orf139 NELFB TMEM210 ABCA2 NOXA1 ENTPD2 DPP7 GRIN1 CLIC3 C9orf173-AS1 RNF208 C9orf142 EXD3 MIR4479 NPDC1 EDF1 TUBB4B SLC34A3 PHPT1 RNF224 NSMF TRAF2 MIR3621 LCNL1 TPRN MIR4292 MAN1B1-AS1
nsv951207	Chr.9:137136949 - 137379148 on Build GRCh38	Deletion	NRARP EXD3 TOR4A LRRC26 CYSRT1 SSNA1 TMEM203 STPG3 NDOR1 NELFB TUBB4B TMEM210 SLC34A3 FAM166A RNF224 GRIN1 MIR3621 C9orf173-AS1 TPRN RNF208 ANAPC2
nsv1161918	Chr.9:137118319 - 137438026 on Build GRCh38	Duplication	NRARP EXD3 TOR4A LRRC26 CYSRT1 SSNA1 TMEM203 ENTPD8 STPG3 NDOR1 NELFB TUBB4B TMEM210 SLC34A3 FAM166A NOXA1 RNF224 GRIN1 MIR3621 C9orf173-AS1 TPRN RNF208 ANAPC2
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	TOR4A LRRC26 SSNA1 TMEM203 HSPC324 MIR6722 TMEM141 PRR31 ANAPC2 AGPAT2 NRARP CYSRT1 STPG3 CCDC183-AS1 RABL6 NDOR1 CCDC183 FAM166A MAN1B1 FBXW5 LCN12 C8G MAMDC4 LOC101930307 LCN10 PTGDS SAPCD2 LOC100128593 FAM69B UAP1L1 LCN8 FUT7 C9orf172 C9orf139 EGFL7 NELFB TMEM210 SNHG7 ABCA2 ENTPD2 DPP7 GRIN1 CLIC3 C9orf173-AS1 RNF208 MIR126 C9orf142 EXD3 SNORA17B LINC01451 MIR4479 NPDC1 EDF1 SNORA17A TUBB4B LCN15 SLC34A3 PHPT1 RNF224 LCN6 TRAF2 MIR3621 LCNL1 TPRN MIR4292 MAN1B1-AS1

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

structural protein