Hs00612884_cn

• Gene Symbol: SNAPC4
• Assay Reference Genome Location: Chr.9:136375568 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 6621
• Gene Name: small nuclear RNA activating complex polypeptide 4
• Gene Aliases: PTFalpha, SNAP190
• Location: Chr.9:136375571-136400220 on Build GRCh38
• Assay Gene Location: Overlaps - Exon 24

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAPC4	NM_003086.2			NP_003077.2
	XM_005266096.2			XP_005266153.1
	XM_006717241.2			XP_006717304.1
	XM_006717242.3			XP_006717305.1
	XM_006717244.2			XP_006717307.1
	XM_017015058.1			XP_016870547.1
	AF032387.1			AAC02972.1
	AK023513.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv831760	Chr.9:136366430 - 136480358 on Build GRCh38	Loss	SDCCAG3 PMPCA SNAPC4 CARD9 SEC16A INPP5E
nsv509333	Chr.9:136346749 - 136440541 on Build GRCh38	Insertion	DNLZ SDCCAG3 GPSM1 PMPCA SNAPC4 CARD9 SEC16A INPP5E
nsv6764	Chr.9:136342675 - 136387661 on Build GRCh38	Deletion	DNLZ GPSM1 SNAPC4 CARD9
nsv1046074	Chr.9:136228197 - 136393924 on Build GRCh38	Gain	LOC101928722 DNLZ GPSM1 SNAPC4 DKFZP434A062 CCDC187 CARD9 ESP33 QSOX2
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MIR3621 C9orf172 MAMDC4 UAP1L1 NOTCH1 NPDC1 CLIC3 PRR31 LCN8 MAN1B1 TMEM210 EDF1 LCN15 C9orf163 SDCCAG3 TMEM141 PTGDS NALT1 LCN10 LOC100128593 MAN1B1-AS1 SNORA17B INPP5E CCDC183-AS1 DPP7 SNHG7 SNAPC4 LCN12 CCDC183 MIR4674 DNLZ GRIN1 LCNL1 FBXW5 AGPAT2 TRAF2 LRRC26 SEC16A RABL6 EGFL7 MIR4292 LINC01451 MIR126 FUT7 SNORA17A FAM69B ABCA2 C9orf142 C9orf139 ENTPD2 CARD9 SAPCD2 LOC101930307 PHPT1 LCN6 PMPCA HSPC324 MIR6722 MIR4479 MIR4673 C8G
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	C9orf172 DNLZ MAMDC4 NOTCH1 AGPAT2 TRAF2 SEC16A RABL6 EGFL7 MIR4292 LINC01451 MIR126 SNORA17A FAM69B LCN8 EDF1 LCN15 C9orf163 SDCCAG3 TMEM141 CARD9 NALT1 LCN10 LOC100128593 SNORA17B INPP5E PHPT1 CCDC183-AS1 LCN6 SNHG7 GPSM1 PMPCA SNAPC4 HSPC324 MIR6722 MIR4479 MIR4673 CCDC183 MIR4674
nsv825173	Chr.9:135892081 - 136495763 on Build GRCh38	Gain	LOC101928722 DNLZ C9orf163 SDCCAG3 DKFZP434A062 NOTCH1 LOC105376323 CARD9 UBAC1 QSOX2 SEC16A INPP5E LHX3 C9orf69 GPSM1 PMPCA SNAPC4 CCDC187 ESP33 LOC107987142 CAMSAP1 NACC2
nsv951202	Chr.9:135770355 - 136558248 on Build GRCh38	Deletion	DNLZ NOTCH1 SEC16A LHX3 CCDC187 ESP33 LOC107987142 LOC101928722 C9orf163 SDCCAG3 DKFZP434A062 LOC105376323 CARD9 UBAC1 NALT1 QSOX2 INPP5E C9orf69 KCNT1 GPSM1 PMPCA SNAPC4 CAMSAP1 MIR4673 MIR4674 NACC2

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
transcription from RNA polymerase III promoter
snRNA transcription
cell differentiation
snRNA transcription from RNA polymerase II promoter
snRNA transcription from RNA polymerase III promoter

Function(s)

RNA polymerase II transcription factor activity, sequence-specific DNA binding
transcription factor activity, RNA polymerase II transcription factor recruiting
DNA binding
transcription factor activity, sequence-specific DNA binding
sequence-specific DNA binding
transcription regulatory region DNA binding