Hs00644650_cn

• Gene Symbol: XKR5
• Assay Reference Genome Location: Chr.8:6810389 on build GRCh38
• Cytoband: 8p23.1

Target Gene Details

• Entrez Gene ID: 389610
• Gene Name: XK related 5
• Gene Aliases: HARL2754, UNQ2754, XRG5A, XRG5BM
• Location: Chr.8:6808517-6835644 on Build GRCh38
• Assay Gene Location: Within Exon 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
XKR5	NM_001289973.1	8	3159	NP_001276902.1
	NM_207411.4	7	3021	NP_997294.3
	XM_011534750.2	3	3527	XP_011533052.1
	XM_017013401.1	6	3440	XP_016868890.1
	XM_017013402.1	5	3232	XP_016868891.1
	AY534242.1	7	3021	AAT07091.1
	AY534243.1	8	3013	AAT07092.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1021684	Chr.8:6492570 - 6951933 on Build GRCh38	Loss	MIR4659B AGPAT5 DEFB1 DEFA6 GS1-24F4.2 MIR4659A XKR5 MCPH1 DEFA8P MIR8055 MCPH1-AS1 DEFA4 ANGPT2
nsv610004	Chr.8:6544845 - 6915391 on Build GRCh38	Gain	MIR4659B AGPAT5 MIR4659A DEFB1 XKR5 MCPH1 MIR8055 MCPH1-AS1 ANGPT2 GS1-24F4.2
nsv1025976	Chr.8:6615427 - 6829450 on Build GRCh38	Loss	MIR4659B AGPAT5 MIR4659A XKR5 MCPH1 MIR8055 MCPH1-AS1
esv3576520	Chr.8:6794391 - 7186524 on Build GRCh38	Gain	DEFT1P DEFB1 DEFA9P DEFA11P DEFA6 DEFT1P2 DEFA10P DEFA1 DEFA5 GS1-24F4.2 DEFA7P DEFA3 DEFA1B XKR5 DEFA8P DEFA4
esv2422383	Chr.8:6504868 - 6924071 on Build GRCh38	Duplication	MIR4659B AGPAT5 MIR4659A DEFB1 XKR5 MCPH1 MIR8055 MCPH1-AS1 ANGPT2 GS1-24F4.2
nsv831220	Chr.8:6670324 - 6870969 on Build GRCh38	Gain	MIR4659B AGPAT5 MIR4659A DEFB1 XKR5 MCPH1-AS1 GS1-24F4.2
nsv610006	Chr.8:6710680 - 7063882 on Build GRCh38	Gain	MIR4659B AGPAT5 DEFT1P DEFB1 DEFA9P DEFA11P DEFA6 DEFT1P2 DEFA10P DEFA1 DEFA5 GS1-24F4.2 MIR4659A DEFA7P DEFA3 DEFA1B XKR5 DEFA8P DEFA4
nsv1031577	Chr.8:6712833 - 8008628 on Build GRCh38	Gain	AGPAT5 PRR23D2 SPAG11A USP17L1 DEFT1P2 OR7E125P DEFA1B XKR5 DEFB106A DEFB103B DEFB1 FAM66E FAM90A10P DEFA10P DEFA1 DEFB108P1 LOC101928095 DEFA7P DEFA3 DEFB103A DEFA8P FAM90A7P PRR23D1 DEFA4 DEFB107B DEFA11P DEFB107A ZNF705G LOC101929400 LINC00965 MIR4659A USP17L3 LOC107986910 DEFB104B DEFB106B MIR4659B USP17L8 DEFT1P ZNF705B DEFA9P DEFA6 SPAG11B DEFB104A USP17L4 FAM66B DEFA5 GS1-24F4.2 OR7E154P DEFB4B DEFB4A DEFB105A DEFB109P1B DEFB105B
nsv465437	Chr.8:6797870 - 6971563 on Build GRCh38	Gain	DEFB1 DEFA9P XKR5 DEFA8P DEFA6 DEFA10P DEFA4 GS1-24F4.2
esv2752262	Chr.8:6781378 - 7153553 on Build GRCh38	Gain	DEFT1P DEFB1 DEFA9P DEFA11P DEFA6 DEFT1P2 DEFA10P DEFA1 DEFA5 GS1-24F4.2 DEFA7P DEFA3 DEFA1B XKR5 DEFA8P DEFA4
dgv6876n100	Chr.8:6687977 - 6812428 on Build GRCh38	Loss	MIR4659B AGPAT5 MIR4659A XKR5 MCPH1-AS1

More Information

Additional Information:

For this assay, SNP(s) [rs76759883] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation