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See other AGER CNV Assays ›
Gene Symbol
AGER
Assay Reference Genome
Location

Chr.6:32182593 on build GRCh38
Cytoband
6p21.32
Assay ID Hs00659585_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 177

Gene Name:

 advanced glycosylation end product-specific receptor

Gene Aliases:

 RAGE, SCARJ1

Location:

 Chr.6:32180968-32185247 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGER NM_001136.4 NP_001127.1
NM_001206929.1 NP_001193858.1
NM_001206932.1 NP_001193861.1
NM_001206934.1 NP_001193863.1
NM_001206936.1 NP_001193865.1
NM_001206940.1 NP_001193869.1
NM_001206954.1 NP_001193883.1
NM_001206966.1 NP_001193895.1
NM_172197.2 7 855 NP_751947.1
NR_038190.1
XM_017010328.1 XP_016865817.1
AB036432.1 BAA89369.1
AB061668.1 BAC65465.1
AB061669.1 BAC65466.1
AF536236.1 AAQ10685.1
AF536237.1 AAQ10686.1
AF537303.1 AAQ10782.1
AJ133822.1 7 770 CAB43108.1
AK298100.1
AK313178.1
AY755619.1 AAX07272.1
AY755620.1 AAX07273.1
AY755621.1 AAX07274.1
AY755622.1 AAX07275.1
AY755623.1 AAX07276.1
AY755624.1 AAX07277.1
AY755625.1 AAX07278.1
AY755626.1 AAX07279.1
AY755627.1 AAX07280.1
AY755628.1 AAX07281.1
BC020669.1 AAH20669.1
BM971899.1
DQ104251.1
DQ104252.1
DQ104253.1
DQ104254.1
EU117141.1
EU428811.1
EU428812.1
EU428813.1
EU428814.1
EU428815.1
EU428816.1
EU826618.1
FJ545655.1
GU139370.1
GU139371.1
GU139372.1
GU139373.1
GU139374.1
GU139375.1
GU139376.1
GU139377.1
GU139378.1
GU139379.1
GU139380.1
GU139381.1
GU139382.1
GU139383.1
GU139384.1
HQ148133.1
HQ148134.1
HQ148135.1
KC692917.1
M91211.1 AAA03574.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss GPSM3 RNF5 MIR6833 PPT2 PBX2 NOTCH4 LOC100507547 AGPAT1 AGER TNXB MIR6721 EGFL8 FKBPL ATF6B PPT2-EGFL8 PRRT1
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss C6orf10 HLA-DQB1-AS1 HLA-DQB2 C4B CYP21A1P TNXA HLA-DQA2 MIR3135B PBX2 HLA-DRB6 NOTCH4 BTNL2 CYP21A2 MIR6721 EGFL8 FKBPL PPT2-EGFL8 PRRT1 HCG23 GPSM3 HLA-DRB1 LOC101929163 RNF5 HLA-DQB1 C4A MIR6833 HLA-DRB5 PPT2 LOC100507547 AGPAT1 AGER HLA-DRA TNXB HLA-DQA1 ATF6B
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss SKIV2L C4B TNXA STK19 HLA-DRB6 BTNL2 DXO HSPA1A FKBPL HCG23 HLA-DRB1 RNF5 C4A MIR6833 LOC100507547 NEU1 CFB HLA-DQA1 C2 C2-AS1 C6orf10 HLA-DQB1-AS1 EHMT2 CYP21A1P PBX2 NOTCH4 CYP21A2 MIR1236 MIR6721 EGFL8 SNORD52 PPT2-EGFL8 PRRT1 SNORD48 GPSM3 LOC101929163 C6orf48 HLA-DQB1 HSPA1B HLA-DRB5 SLC44A4 PPT2 AGPAT1 AGER HLA-DRA TNXB NELFE ATF6B ZBTB12
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss C2-AS1 SKIV2L C4B CYP21A1P TNXA STK19 PBX2 NOTCH4 DXO CYP21A2 MIR1236 MIR6721 EGFL8 FKBPL PPT2-EGFL8 PRRT1 GPSM3 RNF5 C4A MIR6833 PPT2 LOC100507547 AGPAT1 AGER CFB TNXB C2 NELFE ATF6B
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion SKIV2L VARS SAPCD1-AS1 DDX39B-AS1 C4B DDAH2 LY6G5B ABHD16A C6orf47 TNXA STK19 LTA HLA-DRB6 LOC102725068 BTNL2 DXO HSPA1A DDX39B FKBPL ATP6V1G2-DDX39B HCG23 HLA-DRB1 RNF5 MICB VWA7 LY6G6F LY6G5C C4A MIR6833 LY6G6E BAG6 LTB LOC100507547 NEU1 CFB MIR6832 HSPA1L LST1 C2 CSNK2B NFKBIL1 SNORD84 TNF C2-AS1 C6orf10 GPANK1 PRRC2A EHMT2 HCG26 SNORA38 CYP21A1P MSH5 PBX2 NOTCH4 MCCD1 ATP6V1G2 HCP5 LY6G6D CYP21A2 AIF1 MIR1236 MIR6721 EGFL8 SNORD52 C6orf25 PPT2-EGFL8 PRRT1 SNORD48 LOC100287329 GPSM3 NCR3 LOC101929163 C6orf48 MIR4646 LY6G6C HSPA1B CLIC1 SAPCD1 HLA-DRB5 SLC44A4 SNORD117 PPT2 MSH5-SAPCD1 APOM AGPAT1 AGER LSM2 HLA-DRA TNXB NELFE ATF6B ZBTB12
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion HLA-DPB2 HLA-DQB2 VARS C4B DDAH2 LY6G5B ABHD16A C6orf47 LTA HLA-DRB6 LOC102725068 BTNL2 DXO PSMB8-AS1 HSPA1A FKBPL RPS18 ATP6V1G2-DDX39B HLA-DRB1 RNF5 COL11A2 MICB VWA7 LY6G6F MIR6833 PSMB9 LY6G6E RXRB LTB B3GALT4 MIR6832 HSPA1L LST1 CSNK2B SNORD84 GPANK1 HLA-DPB1 EHMT2 HCG26 CYP21A1P HCG25 HLA-DQA2 PPP1R2P1 PBX2 TAP2 DAXX ATP6V1G2 HLA-DOA HLA-DMA AIF1 MIR1236 MIR6721 EGFL8 SNORD52 SNORD48 HLA-DPA1 LOC101929163 SLC39A7 PHF1 MIR4646 WDR46 HSPA1B CLIC1 HCG24 SNORD117 PPT2 MIR6873 MSH5-SAPCD1 AGPAT1 AGER LSM2 ATF6B BRD2 RGL2 SKIV2L SYNGAP1 SAPCD1-AS1 DDX39B-AS1 TNXA STK19 MIR3135B CUTA DDX39B HCG23 TAP1 HSD17B8 ZBTB22 MIR6834 LOC100294145 LY6G5C C4A BAG6 MIR219A1 LOC100507547 NEU1 CFB HLA-DQA1 C2 TAPBP NFKBIL1 TNF C2-AS1 C6orf10 HLA-DQB1-AS1 PRRC2A MIR5004 ZBTB9 SNORA38 RING1 MSH5 NOTCH4 MCCD1 HCP5 LY6G6D CYP21A2 VPS52 C6orf25 PPT2-EGFL8 PRRT1 LOC100287329 PSMB8 HLA-DMB GPSM3 NCR3 C6orf48 HLA-DQB1 LY6G6C SAPCD1 PFDN6 HLA-DRB5 SLC44A4 HLA-DOB KIFC1 APOM HLA-DRA TNXB NELFE ZBTB12
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss GPSM3 RNF5 MIR6833 PPT2 PBX2 NOTCH4 LOC100507547 AGPAT1 AGER TNXB MIR6721 EGFL8 FKBPL ATF6B PPT2-EGFL8 PRRT1
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion HLA-DPB2 HLA-DQB2 VARS C4B DDAH2 LY6G5B ABHD16A C6orf47 LTA HLA-DRB6 LOC102725068 BTNL2 DXO PSMB8-AS1 HSPA1A FKBPL RPS18 ATP6V1G2-DDX39B HLA-DRB1 RNF5 COL11A2 MICB VWA7 LY6G6F MIR6833 PSMB9 LY6G6E RXRB LTB B3GALT4 MIR6832 HSPA1L LST1 CSNK2B SNORD84 GPANK1 HLA-DPB1 EHMT2 HCG26 CYP21A1P HCG25 HLA-DQA2 PPP1R2P1 PBX2 TAP2 DAXX ATP6V1G2 HLA-DOA HLA-DMA AIF1 MIR1236 MIR6721 EGFL8 SNORD52 SNORD48 HLA-DPA1 LOC101929163 SLC39A7 PHF1 MIR4646 WDR46 HSPA1B CLIC1 HCG24 SNORD117 PPT2 MIR6873 MSH5-SAPCD1 AGPAT1 AGER LSM2 ATF6B BRD2 RGL2 SKIV2L SYNGAP1 SAPCD1-AS1 DDX39B-AS1 TNXA STK19 MIR3135B CUTA DDX39B HCG23 TAP1 HSD17B8 ZBTB22 MIR6834 LOC100294145 LY6G5C C4A BAG6 MIR219A1 LOC100507547 NEU1 CFB HLA-DQA1 C2 TAPBP NFKBIL1 TNF C2-AS1 C6orf10 HLA-DQB1-AS1 PRRC2A MIR5004 ZBTB9 SNORA38 RING1 MSH5 NOTCH4 MCCD1 HCP5 LY6G6D CYP21A2 VPS52 C6orf25 PPT2-EGFL8 PRRT1 LOC100287329 PSMB8 HLA-DMB GPSM3 NCR3 C6orf48 HLA-DQB1 LY6G6C SAPCD1 PFDN6 HLA-DRB5 SLC44A4 HLA-DOB KIFC1 APOM HLA-DRA TNXB NELFE ZBTB12
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss MICA SKIV2L VARS SAPCD1-AS1 DDX39B-AS1 C4B DDAH2 LY6G5B ABHD16A C6orf47 TNXA STK19 LTA LOC102725068 BTNL2 DXO HSPA1A DDX39B FKBPL ATP6V1G2-DDX39B HCG23 RNF5 MICB VWA7 LY6G6F LY6G5C C4A MIR6833 LY6G6E BAG6 LTB LOC100507547 NEU1 CFB MIR6832 HSPA1L LST1 C2 CSNK2B NFKBIL1 SNORD84 TNF C2-AS1 C6orf10 GPANK1 HLA-B PRRC2A EHMT2 HCG26 SNORA38 CYP21A1P MSH5 PBX2 NOTCH4 MCCD1 ATP6V1G2 HCP5 LY6G6D CYP21A2 AIF1 MIR1236 MIR6721 EGFL8 SNORD52 C6orf25 PPT2-EGFL8 PRRT1 SNORD48 LOC100287329 GPSM3 NCR3 LOC101929163 C6orf48 MIR4646 LY6G6C HSPA1B CLIC1 MIR6891 SAPCD1 SLC44A4 SNORD117 PPT2 MSH5-SAPCD1 APOM AGPAT1 AGER LSM2 HLA-DRA TNXB NELFE ATF6B ZBTB12

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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