Hs00680459_cn

• Gene Symbol: CCDC88B
• Assay Reference Genome Location: Chr.11:64344715 on build GRCh38
• Cytoband: 11q13.1

Target Gene Details

• Entrez Gene ID: 283234
• Gene Name: coiled-coil domain containing 88B
• Gene Aliases: BRLZ, CCDC88, HKRP3, gipie
• Location: Chr.11:64340203-64357534 on Build GRCh38
• Assay Gene Location: Within Exon 14

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CCDC88B	NM_032251.5	14	2223	NP_115627.6
	XM_006718519.3	14	2235	XP_006718582.1
	XM_011544957.2	14	2236	XP_011543259.1
	XM_011544959.2	14	2236	XP_011543261.1
	XM_011544960.2	14	2235	XP_011543262.1
	XM_017017601.1	14	2237	XP_016873090.1
	AK074126.1	8	1656	BAB84952.1
	AK090436.1	14	2218	BAC03417.1
	AK095289.1	5	1194
	BC140822.1	14	2212
	BC140824.1	14	2212
	BC141866.1	14	2202

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv555193	Chr.11:64339671 - 64353102 on Build GRCh38	Loss	MIR7155 CCDC88B
nsv951010	Chr.11:63942829 - 64352128 on Build GRCh38	Deletion	PRDX5 MIR7155 KCNK4 FLRT1 OTUB1 KCNK4-TEX40 NAA40 CCDC88B DNAJC4 BAD ESRRA TRPT1 VEGFB PLCB3 TEX40 COX8A GPR137 MACROD1 LOC105369340 PPP1R14B STIP1 NUDT22 FERMT3 TRMT112 FKBP2
nsv358	Chr.11:64325464 - 64359765 on Build GRCh38	Insertion	MIR7155 RPS6KA4 CCDC88B
nsv832186	Chr.11:64204788 - 64402587 on Build GRCh38	Loss	PRDX5 MIR7155 GPR137 KCNK4 KCNK4-TEX40 LOC105369340 CCDC88B DNAJC4 PPP1R14B BAD NUDT22 FERMT3 TRMT112 FKBP2 ESRRA MIR1237 TRPT1 VEGFB PLCB3 TEX40 RPS6KA4
dgv13n64	Chr.11:64329761 - 64362250 on Build GRCh38	Loss	MIR7155 RPS6KA4 CCDC88B

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

membrane traffic protein

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of T cell proliferation
positive regulation of T cell activation