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See other ATF5 CNV Assays ›
Gene Symbol
ATF5
Assay Reference Genome
Location

Chr.19:49933425 on build GRCh38
Cytoband
19q13.33
Assay ID Hs00726602_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 22809

Gene Name:

 activating transcription factor 5

Gene Aliases:

 ATFX, HMFN0395

Location:

 Chr.19:49928702-49933936 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ATF5 NM_001193646.1 3 1559 NP_001180575.1
NM_001290746.1 3 1530 NP_001277675.1
NM_012068.5 4 1764 NP_036200.2
XM_011526629.2 3 1466 XP_011524931.1
AB021663.2 3 1501 BAA78477.2
AB073613.1 3 1497 BAD38650.1
AK091985.1 2 1473
BU730542.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss SNAR-A14 SNRNP70 PRR12 SNAR-A8 NOSIP IL4I1 CGB2 MIR6800 CA11 SNAR-A4 SNAR-A5 KCNJ14 FGF21 MED25 RCN3 SNORD34 LOC105447645 NUCB1 ZNF473 SNAR-C1 GFY PRMT1 FUT1 MIR5088 TULP2 GYS1 LIG1 PLA2G4C-AS1 PPFIA3 SNAR-G2 AKT1S1 SNAR-C5 MIR6799 LMTK3 SNORD35B HRC MIR4324 LOC101059948 SNAR-A2 CGB7 IZUMO1 C19orf73 FLJ26850 MIR4751 PTH2 BCL2L12 FUZ SNAR-D ADM5 HSD17B14 CGB1 ATF5 RPS11 NTF4 FLT3LG SPHK2 LOC101928295 SNAR-A7 SNAR-A10 PLA2G4C CCDC155 TBC1D17 SNAR-A3 TSKS BCAT2 KDELR1 SNAR-A6 CCDC114 SLC17A7 ZNF114 GRWD1 SCAF1 RPL13A SNAR-A12 AP2A1 SNORD32A MIR150 CGB5 SIGLEC16 NTN5 SNAR-B1 SIGLEC11 FCGRT SNAR-G1 PTOV1-AS2 RRAS LOC100287477 FTL PTOV1-AS1 RUVBL2 SNORD33 PNKP BSPH1 SNAR-A1 FUT2 CARD8-AS1 SNAR-A13 GRIN2D ELSPBP1 PLEKHA4 SPACA4 SNORD35A TRPM4 DBP CD37 EMP3 SNAR-C2 SNAR-C3 VRK3 BAX CGB8 TMEM143 SYNGR4 FAM83E SNAR-C4 NUP62 RASIP1 CGB3 MIR6798 LOC105372430 LIN7B SLC6A16 PIH1D1 NUCB1-AS1 PTOV1 SNAR-B2 MIR4749 PPP1R15A SNAR-A9 CARD8 SEC1P KCNA7 DHDH CABP5 CPT1C IRF3 SNAR-A11 SULT2B1 MIR4750 MAMSTR DKKL1 LHB TEAD2 C19orf68 RPL18 PRRG2 CYTH2 ALDH16A1
nsv1065648 Chr.19:49924738 - 50001154 on Build GRCh38 Gain MIR4751 NUP62 SIGLEC16 IL4I1 VRK3 ATF5 SIGLEC11
dgv53n68 Chr.19:49724393 - 49943224 on Build GRCh38 Loss MIR4751 PTOV1-AS2 FUZ TSKS NUP62 IL4I1 MIR6800 MIR4750 AKT1S1 PTOV1-AS1 ATF5 AP2A1 MIR6799 MED25 PTOV1 MIR4749 PNKP TBC1D17
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion MIR4751 BCL2L12 PTOV1-AS2 FUZ PRR12 NOSIP NUP62 IL4I1 RRAS MIR6800 ADM5 PTOV1-AS1 ATF5 MED25 PTOV1 MIR4749 PNKP PRMT1 TBC1D17 MIR5088 CPT1C TSKS IRF3 MIR4750 AKT1S1 SCAF1 AP2A1 MIR6799 PRRG2
nsv579910 Chr.19:49915478 - 49957657 on Build GRCh38 Gain MIR4751 NUP62 IL4I1 ATF5 SIGLEC11
esv3644630 Chr.19:49877826 - 50039767 on Build GRCh38 Gain MIR4751 NUP62 SIGLEC16 IL4I1 ZNF473 MIR4750 AKT1S1 VRK3 ATF5 SIGLEC11 TBC1D17
dgv54n68 Chr.19:49848512 - 50008788 on Build GRCh38 Loss MIR4751 PTOV1-AS2 NUP62 IL4I1 MIR4750 AKT1S1 PTOV1-AS1 ATF5 SIGLEC16 PTOV1 MIR4749 PNKP VRK3 SIGLEC11 TBC1D17
nsv1058623 Chr.19:49918762 - 49966847 on Build GRCh38 Gain MIR4751 NUP62 IL4I1 ATF5 SIGLEC11
nsv579911 Chr.19:49930731 - 49969159 on Build GRCh38 Gain MIR4751 ATF5 SIGLEC11

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