Hs00742217_cn

• Gene Symbol: LRRC39
• Assay Reference Genome Location: Chr.1:100149321 on build GRCh38
• Cytoband: 1p21.2

Target Gene Details

• Entrez Gene ID: 127495
• Gene Name: leucine rich repeat containing 39
• Gene Aliases: -
• Location: Chr.1:100148448-100178273 on Build GRCh38
• Assay Gene Location: Overlaps Intron 10 - Exon 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRRC39	NM_001256385.1			NP_001243314.1
	NM_001256386.1			NP_001243315.1
	NM_001256387.1			NP_001243316.1
	NM_144620.3			NP_653221.1
	AK096892.1
	AL833417.1
	AY358131.1			AAQ88498.1
	BC009613.1			AAH09613.1

Target Gene Details

• Entrez Gene ID: 54482
• Gene Name: tRNA methyltransferase 13 homolog
• Gene Aliases: CCDC76
• Location: Chr.1:100133080-100150498 on Build GRCh38
• Assay Gene Location: Within Exon 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TRMT13	NM_019083.2	11	1966	NP_061956.2
	NR_135078.1	11	1725
	XM_005270945.3	11	1994	XP_005271002.1
	XM_005270946.2	10	1886	XP_005271003.1
	XM_017001504.1	10	3618	XP_016856993.1
	XM_017001505.1	10	3607	XP_016856994.1
	AK002081.1	11	1953	BAA92074.1
	BC075811.1	11	1963	AAH75811.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv2121	Chr.1:100115063 - 100149647 on Build GRCh38	Insertion	SASS6 LRRC39 TRMT13
nsv830804	Chr.1:100036777 - 100210481 on Build GRCh38	Gain	SASS6 LRRC39 MFSD14A TRMT13 DBT

More Information

Additional Information:

For this assay, SNP(s) [rs72973703] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Process(es)

tRNA methylation

Function(s)

tRNA methyltransferase activity
metal ion binding