Hs00743554_cn

• Gene Symbol: APOBR
• Assay Reference Genome Location: Chr.16:28494690 on build GRCh38
• Cytoband: 16p12.1

Target Gene Details

• Entrez Gene ID: 55911
• Gene Name: apolipoprotein B receptor
• Gene Aliases: APOB100R, APOB48R
• Location: Chr.16:28494649-28498970 on Build GRCh38
• Assay Gene Location: Overlaps Exon 1 - Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
APOBR	NM_018690.3			NP_061160.3
	AF141332.1			AAF76255.1
	AF141334.1			AAF78765.1
	BC119786.1
	BC119788.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv509608	Chr.16:28449797 - 28632895 on Build GRCh38	Insertion	CLN3 NUPR1 APOBR SULT1A1 SGF29 IL27 SULT1A2
esv2758640	Chr.16:28163817 - 29139232 on Build GRCh38	Gain+Loss	RABEP2 LAT MIR6862-1 EIF3CL SGF29 ATP2A1-AS1 MIR4517 NPIP NUPR1 APOBR SH2B1 RRN3P2 SULT1A2 NPIPB9 NPIPB8 MIR6862-2 NPIPB6 ATXN2L NFATC2IP XPO6 MIR4721 SULT1A1 EIF3C TUFM ATP2A1 CD19 CLN3 LOC101928215 SBK1 SPNS1 IL27
nsv1059555	Chr.16:28373144 - 29195838 on Build GRCh38	Gain	RABEP2 LAT MIR6862-1 EIF3CL SGF29 ATP2A1-AS1 MIR4517 NPIP NUPR1 APOBR SH2B1 RRN3P2 SULT1A2 NPIPB9 NPIPB8 MIR6862-2 ATXN2L NFATC2IP MIR4721 SULT1A1 EIF3C TUFM ATP2A1 CD19 CLN3 LOC107984832 LOC101928215 SPNS1 IL27
nsv833180	Chr.16:28346157 - 28574165 on Build GRCh38	Loss	CLN3 NPIPB6 NUPR1 APOBR MIR6862-1 EIF3CL SGF29 IL27
nsv9415	Chr.16:28468881 - 28498959 on Build GRCh38	Gain	CLN3 APOBR

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

triglyceride metabolic process
lipid transport
receptor-mediated endocytosis
cholesterol metabolic process

Function(s)

very-low-density lipoprotein particle receptor activity