Hs00747410_cn

• Gene Symbol: CCDC183
• Assay Reference Genome Location: Chr.9:136805370 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 84960
• Gene Name: coiled-coil domain containing 183
• Gene Aliases: KIAA1984, PARF, bA216L13.7
• Location: Chr.9:136796338-136807741 on Build GRCh38
• Assay Gene Location: Overlaps Intron 8 - Exon 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CCDC183	NM_001039374.4			NP_001034463.4
	AK090683.1			BAC03504.1
	AK092639.1			BAC03931.1
	BC064582.1			AAH64582.1
	BC137317.1
	BC137318.1
	DA235138.1

Target Gene Details

• Entrez Gene ID: 100131193
• Gene Name: CCDC183 antisense RNA 1
• Gene Aliases: KIAA1984-AS1
• Location: Chr.9:136803927-136808848 on Build GRCh38
• Assay Gene Location: Within Exon 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CCDC183-AS1	NR_024580.1	5	943
	AK055547.1	5	943	BAB70952.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv818738	Chr.9:136740043 - 137009585 on Build GRCh38	Gain	CCDC183 RABL6 EDF1 LCN12 PTGDS PRR31 TRAF2 TMEM141 MIR6722 CCDC183-AS1 LCNL1 LOC100128593 LCN6 MIR4479 LCN15 LCN8 MAMDC4 C9orf172 PHPT1 ABCA2 C9orf142 FBXW5 MIR4292 LCN10 CLIC3 C8G
nsv951204	Chr.9:136803249 - 136807748 on Build GRCh38	Deletion	CCDC183 CCDC183-AS1
esv29973	Chr.9:136795692 - 136859658 on Build GRCh38	Loss	CCDC183 RABL6 MIR4292 CCDC183-AS1 MAMDC4 C9orf172 PHPT1
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	CCDC183 RABL6 EDF1 DNLZ PMPCA UAP1L1 ENTPD2 SAPCD2 TRAF2 NALT1 MIR6722 INPP5E MIR3621 CCDC183-AS1 LOC100128593 LCN6 CARD9 MIR4479 LCN8 MAN1B1 GRIN1 FBXW5 MIR4292 SNORA17A MIR4673 C9orf139 LCN10 CLIC3 SNAPC4 LCN12 SEC16A PTGDS MIR4674 FUT7 PRR31 NOTCH1 SNHG7 TMEM141 EGFL7 MIR126 NPDC1 LCNL1 LRRC26 LINC01451 TMEM210 AGPAT2 LCN15 MAN1B1-AS1 MAMDC4 C9orf172 DPP7 PHPT1 C9orf163 ABCA2 C9orf142 LOC101930307 SNORA17B SDCCAG3 HSPC324 FAM69B C8G
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	CCDC183 RABL6 SNAPC4 EDF1 DNLZ PMPCA SEC16A MIR4674 TRAF2 NOTCH1 SNHG7 TMEM141 NALT1 EGFL7 MIR6722 MIR126 INPP5E CCDC183-AS1 LOC100128593 LCN6 LINC01451 CARD9 MIR4479 GPSM1 AGPAT2 LCN15 LCN8 MAMDC4 C9orf172 PHPT1 C9orf163 SNORA17B SDCCAG3 HSPC324 MIR4292 SNORA17A MIR4673 FAM69B LCN10
esv3891732	Chr.9:136725859 - 136806153 on Build GRCh38	Loss	CCDC183 LCN15 MIR6722 SNORA17B LCN8 CCDC183-AS1 SNORA17A LCN10 LOC100128593 LCN6 SNHG7 TMEM141
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	CCDC183 RABL6 EDF1 UAP1L1 TMEM203 ENTPD2 RNF208 SAPCD2 TRAF2 MIR6722 SLC34A3 MIR3621 NRARP CCDC183-AS1 LOC100128593 LCN6 CYSRT1 MIR4479 LCN8 MAN1B1 TOR4A TUBB4B NELFB GRIN1 FBXW5 MIR4292 SNORA17A ANAPC2 C9orf139 LCN10 CLIC3 LCN12 NDOR1 PTGDS C9orf173-AS1 FUT7 PRR31 SNHG7 TMEM141 EGFL7 MIR126 NPDC1 LCNL1 FAM166A LRRC26 LINC01451 TMEM210 AGPAT2 LCN15 MAN1B1-AS1 MAMDC4 C9orf172 TPRN DPP7 PHPT1 ABCA2 C9orf142 LOC101930307 SNORA17B EXD3 HSPC324 RNF224 FAM69B SSNA1 C8G STPG3

More Information

Additional Information:

For this assay, SNP(s) [rs114312295] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, Non-exonic, DGV Variation