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See other PDLIM3 CNV Assays ›
Gene Symbol
PDLIM3
Assay Reference Genome
Location

Chr.4:185502117 on build GRCh38
Cytoband
4q35.1
Assay ID Hs00761624_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 27295

Gene Name:

 PDZ and LIM domain 3

Gene Aliases:

 ALP

Location:

 Chr.4:185500660-185535606 on Build GRCh38

Assay Gene Location:

 Within Exon 9
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDLIM3 NM_001114107.4 7 1252 NP_001107579.1
NM_001257962.1 7 1132 NP_001244891.1
NM_001257963.1 5 895 NP_001244892.1
NM_014476.5 8 1396 NP_055291.2
NR_047562.1 6 1064
AF002280.1 8 1318 AAC16670.1
AF002282.1 7 1174 AAC16672.1
AF039018.1 8 1342 AAB96665.1
AK129863.1 6 933
AK222966.1 8 1300 BAD96686.1
BC027870.1 7 1179 AAH27870.1
BX647263.1 4 4773
CD625728.1
CR739525.1 1 353

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv596373 Chr.4:185451672 - 185605031 on Build GRCh38 Gain LOC105377590 SORBS2 PDLIM3 CCDC110
dgv5493n100 Chr.4:185446588 - 185605031 on Build GRCh38 Gain LOC105377590 C4orf47 SORBS2 PDLIM3 CCDC110
esv3603504 Chr.4:185498199 - 185517654 on Build GRCh38 Gain PDLIM3
esv3603496 Chr.4:185447616 - 185603060 on Build GRCh38 Gain LOC105377590 C4orf47 SORBS2 PDLIM3 CCDC110
nsv517035 Chr.4:185445161 - 185600889 on Build GRCh38 Gain+Loss LOC105377590 C4orf47 SORBS2 PDLIM3 CCDC110
nsv527026 Chr.4:185404275 - 185632326 on Build GRCh38 Gain LOC105377590 C4orf47 SORBS2 PDLIM3 UFSP2 CCDC110
nsv508339 Chr.4:185501498 - 185533923 on Build GRCh38 Deletion PDLIM3
esv2759309 Chr.4:185391971 - 185553542 on Build GRCh38 Loss LRP2BP LOC105377590 C4orf47 PDLIM3 ANKRD37 UFSP2 CCDC110
nsv1029738 Chr.4:185450051 - 185515559 on Build GRCh38 Gain LOC105377590 PDLIM3 CCDC110
nsv4639 Chr.4:185485731 - 185524173 on Build GRCh38 Deletion PDLIM3

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More Information


Additional Information:

For this assay, SNP(s) [rs138685478] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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