Hs00773612_cn

• Gene Symbol: SPATC1L
• Assay Reference Genome Location: Chr.21:46168387 on build GRCh38
• Cytoband: 21q22.3

Target Gene Details

• Entrez Gene ID: 84221
• Gene Name: spermatogenesis and centriole associated 1-like
• Gene Aliases: C21orf56
• Location: Chr.21:46161148-46185159 on Build GRCh38
• Assay Gene Location: Within Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SPATC1L	NM_001142854.1	3	1527	NP_001136326.1
	NM_032261.4	2	376	NP_115637.3
	XM_005261188.4	3	1302	XP_005261245.1
	XM_017028480.1	4	1249	XP_016883969.1
	AK304535.1	3	1527
	AK309847.1	2	365
	AL136871.1	2	304	CAB66805.1
	BC009497.2	1	261
	BC065570.1	1	228
	BC084577.1	2	348	AAH84577.1
	BC093804.1	1	97
	BC112293.1	1	97
	CR533451.1			CAG38482.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv519904	Chr.21:46163592 - 46461396 on Build GRCh38	Loss	MCM3AP-AS1 DIP2A PCNT SPATC1L MCM3AP LSS YBEY C21orf58
nsv1061087	Chr.21:46056174 - 46223305 on Build GRCh38	Loss	FTCD SPATC1L LSS COL6A2
nsv509804	Chr.21:45879599 - 46235140 on Build GRCh38	Insertion	FTCD LOC101928796 MCM3AP-AS1 PCBP3 SPATC1L MCM3AP LSS COL6A2 COL6A1
nsv3545	Chr.21:46168351 - 46180400 on Build GRCh38	Insertion	SPATC1L
nsv587954	Chr.21:46162188 - 46183551 on Build GRCh38	Loss	SPATC1L
nsv470910	Chr.21:45933861 - 46665076 on Build GRCh38	Gain	FTCD LOC101928796 PCBP3 DIP2A LSS PRMT2 COL6A2 COL6A1 MCM3AP-AS1 PCNT SPATC1L MCM3AP DIP2A-IT1 YBEY C21orf58 S100B
nsv1060978	Chr.21:46068159 - 46413726 on Build GRCh38	Gain	FTCD MCM3AP-AS1 PCNT SPATC1L MCM3AP LSS YBEY C21orf58 COL6A2
nsv470911	Chr.21:46115334 - 46171856 on Build GRCh38	Loss	FTCD SPATC1L COL6A2

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

biological_process

Function(s)

molecular_function
protein binding