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See other MSLN CNV Assays ›
Gene Symbol
MSLN
Assay Reference Genome
Location

Chr.16:763258 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00773668_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10232

Gene Name:

 mesothelin

Gene Aliases:

 MPF, SMRP

Location:

 Chr.16:760746-768865 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MSLN NM_001177355.2 NP_001170826.1
NM_005823.5 NP_005814.2
NM_013404.4 NP_037536.2
XM_005255034.4 XP_005255091.1
XM_011522348.2 XP_011520650.1
XM_017022853.1 XP_016878342.1
XM_017022854.1 XP_016878343.1
XM_017022855.1 XP_016878344.1
XM_017022856.1 XP_016878345.1
XM_017022857.1 XP_016878346.1
XM_017022858.1 XP_016878347.1
AL545401.3
AY743922.1 AAV87530.1
BC003512.1 AAH03512.1
BC009272.2 AAH09272.1
D49441.1 BAA08419.1
U40434.1 AAC50348.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv571025 Chr.16:760143 - 768092 on Build GRCh38 Gain MSLN
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain MSLN CHTF18 GNG13 MIR662 RPUSD1 PRR25
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MRPS34 MIR3180-5 PRR35 AMDHD2 GNPTG LOC100134368 MPG MRPL28 WDR24 RAB40C MIR3677 TMEM8A MEIOB EME2 CEMP1 SNORA64 RHOT2 KCTD5 TRAF7 WASIR2 SPSB3 PDPK1 IGFALS HBQ1 RPS2 LOC105371038 LOC105371047 SNHG19 LOC729652 C1QTNF8 TMEM204 GFER TPSAB1 LMF1 RAB11FIP3 LOC107984876 ABCA17P RHBDF1 MIR662 LOC107987233 FBXL16 RNPS1 MIR940 ATP6V0C NUBP2 METRN HAGH HAGHL NDUFB10 ECI1 FLJ42627 WFIKKN1 SNHG9 NME4 FAM173A BRICD5 NME3 E4F1 TSR3 DDX11L10 LINC00254 SNORA10 GNG13 NTN3 HBA2 HBM MAPK8IP3 MIR4717 LINC00235 C16orf91 NTHL1 AXIN1 CASKIN1 PTX4 C16orf59 MIR6768 CLCN7 UNKL STUB1 PRSS29P LOC652276 SNORD60 HS3ST6 CACNA1H MCRIP2 SYNGR3 BAIAP3 CCDC154 MIR5587 NARFL JMJD8 MIR3177 CRAMP1 PGP RHBDL1 RGS11 CCDC78 TBC1D24 NPRL3 RPUSD1 NPW ERVK13-1 TPSG1 HBA1 LOC101929280 MIR3178 LOC105371049 LOC105371046 PIGQ LOC105371184 RPL3L TPSD1 RPL23AP5 WDR90 ZNF598 PRSS27 PRR25 MIR3176 PKD1 MSRB1 LOC100287175 UBE2I TSC2 TBL3 SNORA78 DECR2 FAM234A MIR6511B1 MLST8 CCNF ABCA3 LOC106660606 LMF1-AS1 MIR6859-4 NHLRC4 RNF151 TPSB2 MIR4516 DNASE1L2 METTL26 TELO2 FAHD1 MIR6767 SLC9A3R2 HN1L SNRNP25 SSTR5-AS1 HBZ LOC105371045 NOXO1 MIR1225 ARHGDIG SSTR5 MSLN LUC7L CAPN15 PDIA2 IFT140 SOX8 RAB26 CHTF18 POLR3K
nsv1702 Chr.16:751088 - 784288 on Build GRCh38 Insertion MSLN MIR662
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss PRR35 MIR5587 METRN NARFL JMJD8 RHBDL1 HAGHL CCDC78 WDR24 WFIKKN1 RPUSD1 NHLRC4 FAM173A RAB40C METTL26 LOC101929280 GNG13 RHOT2 PIGQ LOC105371184 LINC00235 WDR90 LOC105371038 PRR25 MIR3176 MSLN CAPN15 STUB1 RAB11FIP3 LOC100287175 CHTF18 MCRIP2 MIR662 LOC107987233 FBXL16
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss PRR35 MIR5587 METRN NARFL JMJD8 RHBDL1 HAGHL CCDC78 WDR24 WFIKKN1 RPUSD1 NHLRC4 FAM173A RAB40C METTL26 LOC101929280 GNG13 RHOT2 PIGQ LOC105371184 LINC00235 WDR90 LOC105371038 PRR25 MIR3176 MSLN CAPN15 STUB1 RAB11FIP3 LOC100287175 CHTF18 MCRIP2 MIR662 LOC107987233 FBXL16
nsv571023 Chr.16:750821 - 781496 on Build GRCh38 Loss MSLN MIR662
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion PRR35 MIR5587 METRN NARFL JMJD8 RHBDL1 HAGHL LMF1-AS1 CCDC78 WDR24 WFIKKN1 RPUSD1 NHLRC4 FAM173A RAB40C METTL26 LOC101929280 GNG13 RHOT2 PIGQ LOC105371184 SSTR5-AS1 LINC00235 WDR90 LOC105371038 PRR25 SSTR5 MIR3176 C1QTNF8 MSLN CAPN15 STUB1 LMF1 RAB11FIP3 LOC100287175 SOX8 LOC107984876 CHTF18 MCRIP2 MIR662 LOC107987233 FBXL16
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication METRN NARFL JMJD8 RHBDL1 HAGHL CCDC78 WDR24 WFIKKN1 RPUSD1 FAM173A RAB40C METTL26 LOC101929280 GNG13 RHOT2 PIGQ LOC105371184 WDR90 LOC105371038 MSLN STUB1 LOC100287175 CHTF18 MCRIP2 MIR662 FBXL16
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication PRR35 MIR5587 METRN NARFL JMJD8 RHBDL1 HAGHL CCDC78 WDR24 WFIKKN1 RPUSD1 NHLRC4 FAM173A RAB40C METTL26 LOC101929280 GNG13 RHOT2 PIGQ LOC105371184 LINC00235 WDR90 LOC105371038 PRR25 MIR3176 MSLN CAPN15 STUB1 RAB11FIP3 LOC100287175 CHTF18 MCRIP2 MIR662 LOC107987233 FBXL16
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss WDR90 METRN NARFL JMJD8 RHBDL1 HAGHL LOC105371038 CCDC78 WDR24 RPUSD1 FAM173A MSLN STUB1 LOC100287175 CHTF18 MCRIP2 GNG13 RHOT2 MIR662 LOC105371184 FBXL16
dgv4827n54 Chr.16:760039 - 810673 on Build GRCh38 Loss MSLN CHTF18 GNG13 MIR662 RPUSD1 PRR25
dgv772e212 Chr.16:749297 - 780622 on Build GRCh38 Loss MSLN MIR662

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

cell adhesion molecule

Gene Ontology Categories:

Function(s) Process(es)


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