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See other MSLN CNV Assays ›
Gene Symbol
MSLN
Assay Reference Genome
Location

Chr.16:768872 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00833235_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10232

Gene Name:

 mesothelin

Gene Aliases:

 MPF, SMRP

Location:

 Chr.16:760746-768865 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 19
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MSLN NM_001177355.2 NP_001170826.1
NM_005823.5 NP_005814.2
NM_013404.4 NP_037536.2
XM_005255034.4 XP_005255091.1
XM_011522348.2 XP_011520650.1
XM_017022853.1 XP_016878342.1
XM_017022854.1 XP_016878343.1
XM_017022855.1 XP_016878344.1
XM_017022856.1 XP_016878345.1
XM_017022857.1 XP_016878346.1
XM_017022858.1 XP_016878347.1
AF180951.1 AAF01409.1
AY743922.1 AAV87530.1
BC003512.1 AAH03512.1
BC009272.2 AAH09272.1
D49441.1 BAA08419.1
U40434.1 AAC50348.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4828n54 Chr.16:760143 - 828324 on Build GRCh38 Gain MIR662 PRR25 GNG13 CHTF18 MSLN RPUSD1
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain MIR662 PRR25 GNG13 CHTF18 MSLN RPUSD1
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LOC105371046 LOC100134368 GNPTG LMF1 RPS2 MIR3180-5 SPSB3 MIR940 NDUFB10 MIR3176 BRICD5 CACNA1H WFIKKN1 MCRIP2 TSR3 RNPS1 ERVK13-1 TELO2 CEMP1 RAB11FIP3 CCDC154 LOC652276 MIR6859-4 RHBDL1 MIR4717 LOC729652 RHOT2 HAGHL C16orf91 TRAF7 PKD1 TSC2 WASIR2 TPSD1 CCDC78 TMEM8A MRPL28 TMEM204 LINC00254 TPSG1 LOC107987233 MIR1225 HBA2 SNHG9 FAM234A METRN NME3 MEIOB MAPK8IP3 FAM173A STUB1 UBE2I NTN3 MIR4516 PRSS27 ABCA3 SSTR5-AS1 MIR3177 ABCA17P NME4 RNF151 AXIN1 PRSS29P FAHD1 LOC106660606 RPUSD1 NPW JMJD8 HBQ1 CRAMP1 LINC00235 PRR25 PGP HS3ST6 LOC105371045 MIR6767 MIR3677 RPL23AP5 E4F1 NOXO1 RAB26 TBC1D24 RGS11 TPSB2 HAGH FBXL16 RHBDF1 IGFALS SNORA78 SNORA64 MSLN NUBP2 UNKL MRPS34 ARHGDIG WDR90 MIR662 IFT140 MLST8 GNG13 BAIAP3 RPL3L SNORA10 ZNF598 LOC105371047 SNORD60 GFER FLJ42627 NTHL1 CLCN7 HBM LOC101929280 PRR35 SNHG19 MIR3178 PDIA2 DECR2 DDX11L10 HN1L C1QTNF8 TPSAB1 MIR6768 SLC9A3R2 TBL3 NPRL3 LOC107984876 SSTR5 RAB40C POLR3K LOC105371184 DNASE1L2 METTL26 KCTD5 MIR6511B1 CASKIN1 LUC7L LOC100287175 NHLRC4 NARFL HBZ PTX4 SNRNP25 LOC105371038 LMF1-AS1 ECI1 CCNF LOC105371049 WDR24 ATP6V0C HBA1 MSRB1 PDPK1 SOX8 EME2 MIR5587 SYNGR3 MPG CHTF18 AMDHD2 PIGQ C16orf59 CAPN15
nsv1702 Chr.16:751088 - 784288 on Build GRCh38 Insertion MIR662 MSLN
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss FBXL16 LOC107987233 MSLN METRN LOC105371184 WDR90 METTL26 MIR662 LOC100287175 FAM173A NHLRC4 STUB1 GNG13 MIR3176 NARFL WFIKKN1 MCRIP2 LOC105371038 RAB11FIP3 WDR24 LOC101929280 PRR35 RHBDL1 RPUSD1 RHOT2 HAGHL JMJD8 MIR5587 LINC00235 PRR25 CHTF18 PIGQ CCDC78 RAB40C CAPN15
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss FBXL16 LOC107987233 MSLN METRN LOC105371184 WDR90 METTL26 MIR662 LOC100287175 FAM173A NHLRC4 STUB1 GNG13 MIR3176 NARFL WFIKKN1 MCRIP2 LOC105371038 RAB11FIP3 WDR24 LOC101929280 PRR35 RHBDL1 RPUSD1 RHOT2 HAGHL JMJD8 MIR5587 LINC00235 PRR25 CHTF18 PIGQ CCDC78 RAB40C CAPN15
nsv571023 Chr.16:750821 - 781496 on Build GRCh38 Loss MIR662 MSLN
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion LMF1 FBXL16 LOC107987233 MSLN METRN LOC105371184 WDR90 METTL26 MIR662 LOC100287175 FAM173A NHLRC4 STUB1 GNG13 MIR3176 NARFL SSTR5-AS1 WFIKKN1 MCRIP2 LOC105371038 LMF1-AS1 RAB11FIP3 WDR24 LOC101929280 PRR35 RHBDL1 RPUSD1 SOX8 RHOT2 HAGHL C1QTNF8 JMJD8 MIR5587 LINC00235 PRR25 CHTF18 LOC107984876 PIGQ CCDC78 SSTR5 RAB40C CAPN15
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication FBXL16 MSLN METRN LOC105371184 WDR90 METTL26 MIR662 LOC100287175 FAM173A STUB1 GNG13 NARFL WFIKKN1 MCRIP2 LOC105371038 WDR24 LOC101929280 RHBDL1 RPUSD1 RHOT2 HAGHL JMJD8 CHTF18 PIGQ CCDC78 RAB40C
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication FBXL16 LOC107987233 MSLN METRN LOC105371184 WDR90 METTL26 MIR662 LOC100287175 FAM173A NHLRC4 STUB1 GNG13 MIR3176 NARFL WFIKKN1 MCRIP2 LOC105371038 RAB11FIP3 WDR24 LOC101929280 PRR35 RHBDL1 RPUSD1 RHOT2 HAGHL JMJD8 MIR5587 LINC00235 PRR25 CHTF18 PIGQ CCDC78 RAB40C CAPN15
nsv571034 Chr.16:767339 - 774098 on Build GRCh38 Gain MIR662 MSLN
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss LOC105371038 FBXL16 WDR24 MSLN METRN RHBDL1 LOC105371184 RPUSD1 RHOT2 HAGHL WDR90 JMJD8 MIR662 LOC100287175 FAM173A STUB1 GNG13 CHTF18 NARFL CCDC78 MCRIP2
dgv4827n54 Chr.16:760039 - 810673 on Build GRCh38 Loss MIR662 PRR25 GNG13 CHTF18 MSLN RPUSD1
dgv772e212 Chr.16:749297 - 780622 on Build GRCh38 Loss MIR662 MSLN

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

cell adhesion molecule

Gene Ontology Categories:

Function(s) Process(es)


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