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See other PRRT1 CNV Assays ›
Gene Symbol
PRRT1
Assay Reference Genome
Location

Chr.6:32150390 on build GRCh38
Cytoband
6p21.32
Assay ID Hs00835819_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 80863

Gene Name:

 proline rich transmembrane protein 1

Gene Aliases:

 C6orf31, DSPD1, IFITMD7, NG5

Location:

 Chr.6:32148363-32151943 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 2 - Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PRRT1 NM_030651.3 NP_085154.3
AK054885.1 BAB70821.1
AK123424.1
BC013201.1 AAH13201.1
BC063046.1 AAH63046.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss NOTCH4 LOC100507547 AGER RNF5 PPT2-EGFL8 MIR6721 MIR6833 GPSM3 AGPAT1 PPT2 PBX2 FKBPL PRRT1 TNXB ATF6B EGFL8
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss HLA-DQA1 LOC100507547 AGER RNF5 PPT2-EGFL8 C6orf10 HLA-DQB2 MIR6833 AGPAT1 C4A HCG23 PBX2 HLA-DRB1 PRRT1 TNXB EGFL8 NOTCH4 MIR3135B BTNL2 C4B HLA-DQB1 HLA-DQB1-AS1 LOC101929163 MIR6721 CYP21A2 HLA-DRB5 GPSM3 PPT2 HLA-DRB6 CYP21A1P FKBPL HLA-DQA2 HLA-DRA ATF6B TNXA
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss HLA-DQA1 AGER RNF5 PPT2-EGFL8 C6orf10 DXO HSPA1A MIR6833 NELFE HCG23 SNORD48 HLA-DRB1 EGFL8 C4B HLA-DQB1 EHMT2 STK19 CFB SLC44A4 GPSM3 PPT2 HLA-DRB6 FKBPL HLA-DRA NEU1 LOC100507547 ZBTB12 SKIV2L SNORD52 MIR1236 AGPAT1 C4A PBX2 PRRT1 TNXB NOTCH4 BTNL2 HLA-DQB1-AS1 LOC101929163 MIR6721 CYP21A2 HLA-DRB5 C2 C2-AS1 CYP21A1P C6orf48 HSPA1B ATF6B TNXA
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss LOC100507547 AGER RNF5 SKIV2L PPT2-EGFL8 DXO MIR6833 MIR1236 NELFE AGPAT1 C4A PBX2 PRRT1 TNXB EGFL8 NOTCH4 C4B MIR6721 CYP21A2 STK19 C2 CFB GPSM3 C2-AS1 PPT2 CYP21A1P FKBPL ATF6B TNXA
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion VARS AGER VWA7 RNF5 BAG6 PPT2-EGFL8 C6orf10 DXO HSPA1A MIR6833 NELFE LTA LTB HCG23 HSPA1L SNORD48 HLA-DRB1 ATP6V1G2-DDX39B EGFL8 LY6G6F GPANK1 MCCD1 SNORD84 LOC100287329 LY6G6C C4B AIF1 LSM2 MICB HCG26 DDAH2 EHMT2 STK19 CFB MIR4646 SLC44A4 GPSM3 MIR6832 PPT2 HLA-DRB6 ATP6V1G2 DDX39B-AS1 FKBPL C6orf47 HLA-DRA NEU1 SAPCD1-AS1 LOC100507547 SNORD117 ZBTB12 SNORA38 NCR3 SKIV2L SNORD52 TNF MSH5-SAPCD1 C6orf25 PRRC2A ABHD16A MIR1236 AGPAT1 DDX39B C4A PBX2 PRRT1 MSH5 TNXB LY6G6E NOTCH4 CSNK2B BTNL2 CLIC1 APOM LOC101929163 NFKBIL1 MIR6721 CYP21A2 HLA-DRB5 C2 SAPCD1 LST1 HCP5 C2-AS1 LOC102725068 CYP21A1P C6orf48 HSPA1B LY6G6D LY6G5B ATF6B TNXA LY6G5C
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion HLA-DQA1 VWA7 B3GALT4 RNF5 C6orf10 DXO MIR6833 COL11A2 MIR5004 LTA LTB HCG23 ZBTB22 ATP6V1G2-DDX39B LY6G6F KIFC1 TAP2 SNORD84 LOC100287329 C4B AIF1 LSM2 MICB DDAH2 BRD2 STK19 GPSM3 PPT2 HLA-DRB6 HCG24 DDX39B-AS1 FKBPL HLA-DRA HLA-DMB MIR6873 NEU1 WDR46 SAPCD1-AS1 RGL2 HLA-DPB1 ZBTB12 NCR3 SKIV2L SNORD52 TNF MSH5-SAPCD1 C6orf25 HLA-DOA PRRC2A C4A PBX2 SYNGAP1 MSH5 LY6G6E NOTCH4 SLC39A7 MIR3135B BTNL2 HLA-DQB1-AS1 LST1 TAPBP HCG25 LOC102725068 C6orf48 PSMB8 LY6G6D TNXA RXRB VARS AGER BAG6 PPT2-EGFL8 HSPA1A HLA-DMA LOC100294145 NELFE PPP1R2P1 HSPA1L SNORD48 HLA-DRB1 EGFL8 VPS52 GPANK1 MCCD1 LY6G6C HLA-DQB1 HCG26 EHMT2 RING1 CFB HLA-DPA1 MIR4646 SLC44A4 MIR6832 TAP1 HLA-DPB2 ATP6V1G2 C6orf47 HLA-DQA2 PSMB9 PFDN6 LOC100507547 SNORD117 SNORA38 CUTA HLA-DQB2 ABHD16A PSMB8-AS1 ZBTB9 MIR1236 AGPAT1 DDX39B RPS18 PRRT1 TNXB DAXX CSNK2B MIR6834 CLIC1 APOM LOC101929163 PHF1 NFKBIL1 HLA-DOB MIR6721 CYP21A2 HLA-DRB5 C2 SAPCD1 MIR219A1 HCP5 C2-AS1 CYP21A1P HSPA1B LY6G5B HSD17B8 ATF6B LY6G5C
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss NOTCH4 LOC100507547 AGER RNF5 PPT2-EGFL8 MIR6721 MIR6833 GPSM3 AGPAT1 PPT2 PBX2 FKBPL PRRT1 TNXB ATF6B EGFL8
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion HLA-DQA1 VWA7 B3GALT4 RNF5 C6orf10 DXO MIR6833 COL11A2 MIR5004 LTA LTB HCG23 ZBTB22 ATP6V1G2-DDX39B LY6G6F KIFC1 TAP2 SNORD84 LOC100287329 C4B AIF1 LSM2 MICB DDAH2 BRD2 STK19 GPSM3 PPT2 HLA-DRB6 HCG24 DDX39B-AS1 FKBPL HLA-DRA HLA-DMB MIR6873 NEU1 WDR46 SAPCD1-AS1 RGL2 HLA-DPB1 ZBTB12 NCR3 SKIV2L SNORD52 TNF MSH5-SAPCD1 C6orf25 HLA-DOA PRRC2A C4A PBX2 SYNGAP1 MSH5 LY6G6E NOTCH4 SLC39A7 MIR3135B BTNL2 HLA-DQB1-AS1 LST1 TAPBP HCG25 LOC102725068 C6orf48 PSMB8 LY6G6D TNXA RXRB VARS AGER BAG6 PPT2-EGFL8 HSPA1A HLA-DMA LOC100294145 NELFE PPP1R2P1 HSPA1L SNORD48 HLA-DRB1 EGFL8 VPS52 GPANK1 MCCD1 LY6G6C HLA-DQB1 HCG26 EHMT2 RING1 CFB HLA-DPA1 MIR4646 SLC44A4 MIR6832 TAP1 HLA-DPB2 ATP6V1G2 C6orf47 HLA-DQA2 PSMB9 PFDN6 LOC100507547 SNORD117 SNORA38 CUTA HLA-DQB2 ABHD16A PSMB8-AS1 ZBTB9 MIR1236 AGPAT1 DDX39B RPS18 PRRT1 TNXB DAXX CSNK2B MIR6834 CLIC1 APOM LOC101929163 PHF1 NFKBIL1 HLA-DOB MIR6721 CYP21A2 HLA-DRB5 C2 SAPCD1 MIR219A1 HCP5 C2-AS1 CYP21A1P HSPA1B LY6G5B HSD17B8 ATF6B LY6G5C
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss VARS AGER VWA7 RNF5 BAG6 PPT2-EGFL8 C6orf10 DXO HSPA1A MIR6833 NELFE LTA LTB MIR6891 HCG23 HSPA1L SNORD48 ATP6V1G2-DDX39B EGFL8 LY6G6F GPANK1 MCCD1 SNORD84 LOC100287329 LY6G6C C4B AIF1 LSM2 MICB HCG26 DDAH2 EHMT2 STK19 CFB MIR4646 SLC44A4 GPSM3 MIR6832 PPT2 ATP6V1G2 DDX39B-AS1 MICA FKBPL C6orf47 HLA-DRA NEU1 SAPCD1-AS1 LOC100507547 SNORD117 ZBTB12 SNORA38 NCR3 SKIV2L SNORD52 TNF MSH5-SAPCD1 C6orf25 PRRC2A ABHD16A MIR1236 HLA-B AGPAT1 DDX39B C4A PBX2 PRRT1 MSH5 TNXB LY6G6E NOTCH4 CSNK2B BTNL2 CLIC1 APOM LOC101929163 NFKBIL1 MIR6721 CYP21A2 C2 SAPCD1 LST1 HCP5 C2-AS1 LOC102725068 CYP21A1P C6orf48 HSPA1B LY6G6D LY6G5B ATF6B TNXA LY6G5C

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s)


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