Hs00856281_cn

• Gene Symbol: SDCCAG3
• Assay Reference Genome Location: Chr.9:136410103 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10807
• Gene Name: serologically defined colon cancer antigen 3
• Gene Aliases: NY-CO-3
• Location: Chr.9:136401922-136410602 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SDCCAG3	NM_001039707.1			NP_001034796.1
	NM_001039708.1			NP_001034797.1
	NM_006643.3			NP_006634.3
	XM_005266050.3			XP_005266107.1
	XM_005266051.3			XP_005266108.1
	XM_011518157.2			XP_011516459.1
	XM_017014218.1	2	366	XP_016869707.1
	XM_017014219.1	2	366	XP_016869708.1
	AL559847.3
	AY349357.1			AAQ56721.1
	BC014515.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv825174	Chr.9:136401929 - 136413005 on Build GRCh38	Gain	SDCCAG3 PMPCA
nsv831760	Chr.9:136366430 - 136480358 on Build GRCh38	Loss	CARD9 SDCCAG3 SEC16A PMPCA SNAPC4 INPP5E
nsv509333	Chr.9:136346749 - 136440541 on Build GRCh38	Insertion	GPSM1 DNLZ CARD9 SDCCAG3 SEC16A PMPCA SNAPC4 INPP5E
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	SNORA17B FUT7 AGPAT2 C9orf139 PHPT1 GRIN1 CCDC183 CCDC183-AS1 LCN12 LCN15 FAM69B LCN10 CARD9 MIR6722 ENTPD2 EGFL7 NALT1 LCNL1 SNORA17A LOC100128593 DNLZ MAN1B1-AS1 FBXW5 INPP5E C9orf172 EDF1 TMEM141 MIR3621 C8G SEC16A MIR4479 MAMDC4 MIR4674 NOTCH1 LCN8 CLIC3 NPDC1 DPP7 MIR4673 HSPC324 LCN6 MAN1B1 MIR126 LOC101930307 ABCA2 PRR31 LINC01451 TMEM210 UAP1L1 MIR4292 SNAPC4 RABL6 LRRC26 C9orf163 SAPCD2 TRAF2 SDCCAG3 C9orf142 PMPCA PTGDS SNHG7
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	SNORA17B MIR4673 HSPC324 AGPAT2 LCN6 PHPT1 CCDC183 MIR126 CCDC183-AS1 LCN15 FAM69B LCN10 CARD9 MIR6722 LINC01451 EGFL7 NALT1 SNORA17A LOC100128593 DNLZ MIR4292 SNAPC4 INPP5E RABL6 GPSM1 C9orf172 EDF1 TMEM141 C9orf163 TRAF2 SDCCAG3 SEC16A PMPCA MIR4479 MAMDC4 MIR4674 NOTCH1 LCN8 SNHG7
nsv825173	Chr.9:135892081 - 136495763 on Build GRCh38	Gain	LOC107987142 ESP33 DKFZP434A062 UBAC1 CCDC187 DNLZ SNAPC4 LOC105376323 CAMSAP1 INPP5E QSOX2 GPSM1 LHX3 C9orf69 LOC101928722 C9orf163 CARD9 SDCCAG3 SEC16A NACC2 PMPCA NOTCH1
nsv615963	Chr.9:136386314 - 136474501 on Build GRCh38	Loss	SDCCAG3 SEC16A PMPCA SNAPC4 INPP5E
nsv951202	Chr.9:135770355 - 136558248 on Build GRCh38	Deletion	LOC107987142 MIR4673 KCNT1 LOC105376323 CAMSAP1 QSOX2 CARD9 NACC2 NALT1 ESP33 DKFZP434A062 UBAC1 CCDC187 DNLZ SNAPC4 INPP5E GPSM1 LHX3 C9orf69 LOC101928722 C9orf163 SDCCAG3 SEC16A PMPCA MIR4674 NOTCH1

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cell cycle
protein transport
regulation of cytokinesis
cell division
retrograde transport, endosome to plasma membrane

Function(s)

protein binding