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Gene Symbol
CROCC
Assay Reference Genome
Location

Chr.1:16924325 on build GRCh38
Cytoband
1p36.13
Assay ID Hs00870732_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 9696

Gene Name:

 ciliary rootlet coiled-coil, rootletin

Gene Aliases:

 ROLT

Location:

 Chr.1:16914082-16972979 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CROCC NM_014675.4 NP_055490.4
XM_006711058.3 XP_006711121.1
XM_011542468.1 XP_011540770.1
XM_011542470.2 XP_011540772.1
XM_017002913.1 XP_016858402.1
XM_017002914.1 XP_016858403.1
XM_017002915.1 XP_016858404.1
AK026910.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv428421 Chr.1:16437838 - 17157486 on Build GRCh38 Gain+Loss LOC102723383 RNU1-2 CROCCP2 RNU1-1 LOC105376796 RNU1-4 CROCCP3 ESPNP MST1P2 CROCC FAM231B SPATA21 NECAP2 MFAP2 LOC100132147 LOC105376805 ATP13A2 NBPF1 SDHB MST1L RNU1-3 MIR3675 FAM231A PADI2
dgv105n100 Chr.1:16850538 - 16935740 on Build GRCh38 Gain+Loss RNU1-2 LOC105376805 CROCC MIR3675
dgv25n67 Chr.1:16903319 - 16934803 on Build GRCh38 Gain CROCC
dgv126n100 Chr.1:16918706 - 16935740 on Build GRCh38 Loss CROCC
dgv113n100 Chr.1:16876990 - 16934756 on Build GRCh38 Gain RNU1-2 LOC105376805 CROCC
nsv433184 Chr.1:16881956 - 16936882 on Build GRCh38 Loss RNU1-2 LOC105376805 CROCC
nsv437207 Chr.1:16890770 - 16930807 on Build GRCh38 Loss RNU1-2 CROCC
nsv1004093 Chr.1:16898463 - 16931632 on Build GRCh38 Gain+Loss CROCC
dgv92n100 Chr.1:16684943 - 17003642 on Build GRCh38 Gain LOC102723383 RNU1-2 LOC105376805 ATP13A2 RNU1-4 ESPNP CROCC MST1L MFAP2 MIR3675
nsv1139475 Chr.1:16856205 - 16949205 on Build GRCh38 Duplication RNU1-2 LOC105376805 CROCC MIR3675
dgv117n100 Chr.1:16883096 - 16935740 on Build GRCh38 Gain+Loss RNU1-2 LOC105376805 CROCC
nsv1151399 Chr.1:16849404 - 16949205 on Build GRCh38 Duplication RNU1-2 LOC105376805 CROCC MIR3675
dgv118n100 Chr.1:16886207 - 16949734 on Build GRCh38 Gain RNU1-2 LOC105376805 CROCC
dgv168n54 Chr.1:16898769 - 16932783 on Build GRCh38 Loss CROCC
esv3892414 Chr.1:16706319 - 16941001 on Build GRCh38 Gain LOC102723383 RNU1-2 LOC105376805 RNU1-4 ESPNP CROCC MST1L MIR3675
dgv166n54 Chr.1:16856620 - 16955930 on Build GRCh38 Gain+Loss RNU1-2 LOC105376805 CROCC MIR3675
dgv13e214 Chr.1:16911922 - 16940201 on Build GRCh38 Gain CROCC
esv29948 Chr.1:16621632 - 16931502 on Build GRCh38 Loss LOC102723383 RNU1-2 CROCCP2 LOC105376805 RNU1-4 ESPNP MST1P2 CROCC MST1L RNU1-3 MIR3675 FAM231A
nsv834258 Chr.1:16850864 - 16954454 on Build GRCh38 Loss RNU1-2 LOC105376805 CROCC MIR3675
dgv1e203 Chr.1:16487426 - 16935752 on Build GRCh38 Gain+Loss LOC102723383 RNU1-2 CROCCP2 RNU1-1 LOC105376796 RNU1-4 CROCCP3 ESPNP MST1P2 CROCC FAM231B LOC100132147 LOC105376805 NBPF1 MST1L RNU1-3 MIR3675 FAM231A
esv2421455 Chr.1:16883108 - 16941001 on Build GRCh38 Duplication RNU1-2 LOC105376805 CROCC
nsv945800 Chr.1:16849164 - 16955509 on Build GRCh38 Duplication RNU1-2 LOC105376805 CROCC MIR3675
esv3577752 Chr.1:16539300 - 16959771 on Build GRCh38 Loss LOC102723383 RNU1-2 CROCCP2 RNU1-4 ESPNP MST1P2 CROCC FAM231B LOC105376805 NBPF1 MST1L RNU1-3 MIR3675 FAM231A
nsv1128591 Chr.1:16895905 - 16949205 on Build GRCh38 Duplication RNU1-2 CROCC
nsv1160181 Chr.1:16864367 - 16949746 on Build GRCh38 Duplication RNU1-2 LOC105376805 CROCC
nsv442727 Chr.1:16868660 - 16935752 on Build GRCh38 Gain RNU1-2 LOC105376805 CROCC
dgv111n100 Chr.1:16864355 - 16968705 on Build GRCh38 Gain RNU1-2 LOC105376805 CROCC
dgv78n100 Chr.1:16660344 - 16949734 on Build GRCh38 Loss LOC102723383 RNU1-2 LOC105376805 RNU1-4 ESPNP CROCC MST1L RNU1-3 MIR3675 FAM231A
dgv123n100 Chr.1:16909177 - 16935740 on Build GRCh38 Loss CROCC
dgv169n54 Chr.1:16912199 - 16930807 on Build GRCh38 Loss CROCC
dgv55n100 Chr.1:16544771 - 16949734 on Build GRCh38 Gain+Loss LOC102723383 RNU1-2 CROCCP2 RNU1-4 ESPNP MST1P2 CROCC LOC105376805 NBPF1 MST1L RNU1-3 MIR3675 FAM231A
nsv508947 Chr.1:16909817 - 17011115 on Build GRCh38 Insertion ATP13A2 CROCC MFAP2
dgv86n100 Chr.1:16679227 - 16956580 on Build GRCh38 Gain LOC102723383 RNU1-2 LOC105376805 RNU1-4 ESPNP CROCC MST1L MIR3675
nsv1002613 Chr.1:16915859 - 16949734 on Build GRCh38 Loss CROCC
dgv101n100 Chr.1:16756084 - 16959812 on Build GRCh38 Gain RNU1-2 LOC105376805 CROCC MST1L MIR3675
nsv829625 Chr.1:16505385 - 16955258 on Build GRCh38 Gain LOC102723383 RNU1-2 CROCCP2 RNU1-1 LOC105376796 RNU1-4 ESPNP MST1P2 CROCC FAM231B LOC100132147 LOC105376805 NBPF1 MST1L RNU1-3 MIR3675 FAM231A
dgv24n67 Chr.1:16896197 - 16946140 on Build GRCh38 Gain CROCC
nsv834280 Chr.1:16888218 - 17123006 on Build GRCh38 Loss RNU1-2 LOC105376805 ATP13A2 SDHB CROCC MFAP2 PADI2
nsv437208 Chr.1:16922390 - 16941834 on Build GRCh38 Loss CROCC
esv29988 Chr.1:16882837 - 16925672 on Build GRCh38 Loss RNU1-2 LOC105376805 CROCC
nsv834269 Chr.1:16855283 - 17038531 on Build GRCh38 Loss RNU1-2 LOC105376805 ATP13A2 SDHB CROCC MFAP2 MIR3675
dgv125n100 Chr.1:16912960 - 16931436 on Build GRCh38 Loss CROCC
nsv482201 Chr.1:16921950 - 16972979 on Build GRCh38 Gain CROCC
dgv54e59 Chr.1:16856670 - 16949868 on Build GRCh38 Duplication RNU1-2 LOC105376805 CROCC MIR3675
dgv63n100 Chr.1:16583102 - 16956580 on Build GRCh38 Gain LOC102723383 RNU1-2 CROCCP2 RNU1-4 ESPNP MST1P2 CROCC LOC105376805 NBPF1 MST1L RNU1-3 MIR3675 FAM231A
esv3892525 Chr.1:16913478 - 16955930 on Build GRCh38 Loss CROCC
nsv9324 Chr.1:16470652 - 16954729 on Build GRCh38 Gain+Loss LOC102723383 RNU1-2 CROCCP2 RNU1-1 LOC105376796 RNU1-4 CROCCP3 ESPNP MST1P2 CROCC FAM231B LOC100132147 LOC105376805 NBPF1 MST1L RNU1-3 MIR3675 FAM231A
dgv171n54 Chr.1:16919140 - 16936882 on Build GRCh38 Loss CROCC
dgv39n100 Chr.1:16451184 - 16965387 on Build GRCh38 Gain LOC102723383 RNU1-2 CROCCP2 RNU1-1 LOC105376796 RNU1-4 CROCCP3 ESPNP MST1P2 CROCC FAM231B NECAP2 LOC100132147 LOC105376805 NBPF1 MST1L RNU1-3 MIR3675 FAM231A
esv33965 Chr.1:16685625 - 16953480 on Build GRCh38 Gain+Loss LOC102723383 RNU1-2 LOC105376805 RNU1-4 ESPNP CROCC MST1L MIR3675
dgv23n67 Chr.1:16881082 - 16946112 on Build GRCh38 Gain RNU1-2 LOC105376805 CROCC
esv26111 Chr.1:16849227 - 16955258 on Build GRCh38 Gain+Loss RNU1-2 LOC105376805 CROCC MIR3675
dgv120n100 Chr.1:16890896 - 16997938 on Build GRCh38 Gain RNU1-2 ATP13A2 CROCC MFAP2

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More Information


Additional Information:

For this assay, SNP(s) [rs113677985] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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