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See other ATF5 CNV Assays ›
Gene Symbol
ATF5
Assay Reference Genome
Location

Chr.19:49932454 on build GRCh38
Cytoband
19q13.33
Assay ID Hs00910642_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 22809

Gene Name:

 activating transcription factor 5

Gene Aliases:

 ATFX, HMFN0395

Location:

 Chr.19:49928702-49933936 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 5 - Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ATF5 NM_001193646.1 NP_001180575.1
NM_001290746.1 NP_001277675.1
NM_012068.5 NP_036200.2
XM_011526629.2 XP_011524931.1
AB021663.2 BAA78477.2
AB073613.1 BAD38650.1
AF305687.1 AAG22558.1
AK024402.1
AK091985.1
AK290592.1
BC005174.2 AAH05174.1
BF528888.1
BM462249.1
BP378116.1
BU187153.1
HY011917.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss CABP5 PNKP PPFIA3 LOC100287477 SYNGR4 SNAR-A2 SNAR-G1 RPL18 GRWD1 ELSPBP1 RCN3 EMP3 FTL AKT1S1 RRAS PRRG2 IRF3 FUT1 MIR4324 RPL13A MIR150 TMEM143 TSKS PRR12 SLC17A7 SNORD34 GRIN2D BSPH1 PTOV1-AS2 HSD17B14 LMTK3 BAX ZNF473 LOC101059948 TRPM4 LOC105372430 AP2A1 GFY SNORD35B FCGRT SNAR-A11 BCL2L12 TEAD2 SCAF1 PTOV1 DKKL1 CARD8-AS1 NUCB1 ZNF114 PLA2G4C SNAR-A9 SNRNP70 DHDH MIR4749 HRC CGB5 KDELR1 MIR4750 SNAR-A1 SULT2B1 KCNJ14 SNAR-A10 MAMSTR FAM83E SNAR-C5 SNAR-A3 SIGLEC16 FUZ CCDC155 SNAR-A4 ATF5 DBP RPS11 SEC1P PRMT1 SNAR-C3 LOC101928295 CGB8 C19orf68 SNAR-B2 MED25 MIR4751 SNAR-C4 SLC6A16 FGF21 MIR6800 PTOV1-AS1 SIGLEC11 ALDH16A1 CGB2 CCDC114 NOSIP SNORD32A CGB3 VRK3 TULP2 SNAR-A6 SNAR-D SNORD35A SNORD33 PPP1R15A NTN5 KCNA7 CPT1C MIR6799 CGB1 NUCB1-AS1 SNAR-G2 SNAR-A5 CARD8 SNAR-A14 SNAR-B1 SNAR-C1 CA11 FLT3LG CGB7 LIG1 RUVBL2 PIH1D1 RASIP1 MIR6798 C19orf73 IL4I1 SNAR-A8 PLEKHA4 NUP62 BCAT2 LHB LOC105447645 MIR5088 FUT2 CD37 PLA2G4C-AS1 ADM5 PTH2 GYS1 SPACA4 FLJ26850 CYTH2 NTF4 SNAR-A7 SNAR-C2 SNAR-A13 IZUMO1 TBC1D17 SPHK2 SNAR-A12 LIN7B
nsv1065648 Chr.19:49924738 - 50001154 on Build GRCh38 Gain SIGLEC11 SIGLEC16 IL4I1 MIR4751 VRK3 NUP62 ATF5
dgv53n68 Chr.19:49724393 - 49943224 on Build GRCh38 Loss PTOV1-AS1 PTOV1 FUZ PNKP MIR4749 ATF5 TSKS MIR4750 IL4I1 MIR6799 MED25 AP2A1 PTOV1-AS2 MIR4751 TBC1D17 NUP62 AKT1S1 MIR6800
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion FUZ PNKP ATF5 PRMT1 IL4I1 MED25 AP2A1 MIR4751 NUP62 AKT1S1 BCL2L12 SCAF1 RRAS MIR6800 PRRG2 PTOV1-AS1 PTOV1 IRF3 MIR5088 NOSIP ADM5 MIR4749 TSKS PRR12 MIR4750 CPT1C MIR6799 PTOV1-AS2 TBC1D17
nsv579910 Chr.19:49915478 - 49957657 on Build GRCh38 Gain SIGLEC11 IL4I1 MIR4751 NUP62 ATF5
esv3644630 Chr.19:49877826 - 50039767 on Build GRCh38 Gain SIGLEC11 MIR4750 SIGLEC16 IL4I1 MIR4751 VRK3 TBC1D17 ZNF473 NUP62 ATF5 AKT1S1
dgv54n68 Chr.19:49848512 - 50008788 on Build GRCh38 Loss PTOV1-AS1 PTOV1 SIGLEC11 SIGLEC16 PNKP VRK3 MIR4749 ATF5 MIR4750 IL4I1 PTOV1-AS2 MIR4751 TBC1D17 NUP62 AKT1S1
nsv1058623 Chr.19:49918762 - 49966847 on Build GRCh38 Gain SIGLEC11 IL4I1 MIR4751 NUP62 ATF5
nsv579911 Chr.19:49930731 - 49969159 on Build GRCh38 Gain SIGLEC11 MIR4751 ATF5

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