Hs00919882_cn

• Gene Symbol: APOBR
• Assay Reference Genome Location: Chr.16:28496354 on build GRCh38
• Cytoband: 16p12.1

Target Gene Details

• Entrez Gene ID: 55911
• Gene Name: apolipoprotein B receptor
• Gene Aliases: APOB100R, APOB48R
• Location: Chr.16:28494649-28498970 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
APOBR	NM_018690.3	2	1346	NP_061160.3
	AF141332.1	3	1296	AAF76255.1
	AF141334.1	3	1296	AAF78765.1
	BC119786.1	3	1296
	BC119788.1	3	1091

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv509608	Chr.16:28449797 - 28632895 on Build GRCh38	Insertion	NUPR1 SGF29 APOBR IL27 CLN3 SULT1A2 SULT1A1
esv2758640	Chr.16:28163817 - 29139232 on Build GRCh38	Gain+Loss	LAT NFATC2IP APOBR TUFM CLN3 MIR6862-1 ATXN2L SPNS1 XPO6 NPIPB6 ATP2A1 IL27 RRN3P2 SULT1A2 SH2B1 EIF3C NUPR1 NPIP MIR4517 SBK1 LOC101928215 SGF29 EIF3CL NPIPB9 CD19 ATP2A1-AS1 NPIPB8 RABEP2 SULT1A1 MIR6862-2 MIR4721
nsv1059555	Chr.16:28373144 - 29195838 on Build GRCh38	Gain	LAT NFATC2IP APOBR TUFM CLN3 MIR6862-1 ATXN2L SPNS1 ATP2A1 IL27 LOC107984832 RRN3P2 SULT1A2 SH2B1 EIF3C NUPR1 NPIP MIR4517 LOC101928215 SGF29 EIF3CL NPIPB9 CD19 ATP2A1-AS1 NPIPB8 RABEP2 SULT1A1 MIR6862-2 MIR4721
nsv833180	Chr.16:28346157 - 28574165 on Build GRCh38	Loss	NPIPB6 NUPR1 SGF29 EIF3CL APOBR IL27 CLN3 MIR6862-1
nsv9415	Chr.16:28468881 - 28498959 on Build GRCh38	Gain	APOBR CLN3

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

triglyceride metabolic process
lipid transport
receptor-mediated endocytosis
cholesterol metabolic process

Function(s)

very-low-density lipoprotein particle receptor activity