Genomic Map
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Target Gene Details
Entrez Gene ID: | 51542 |
Gene Name: | VPS54, GARP complex subunit |
Gene Aliases: |
HCC8, PPP1R164, SLP-8p, VPS54L, WR, hVps54L |
Location: |
Chr.2:63892149-64019421 on Build GRCh38 |
Assay Gene Location: | Within Exon 23 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| VPS54 | NM_001005739.1 | 23 | 3135 | NP_001005739.1 |
| NM_016516.2 | 23 | 3171 | NP_057600.2 | |
| XM_006712029.3 | 22 | 3031 | XP_006712092.1 | |
| XM_017004316.1 | 22 | 2851 | XP_016859805.1 | |
| AF102177.1 | 22 | 3028 | AAF37319.1 | |
| AK002205.1 | 11 | 1276 | BAA92134.1 | |
| AK025545.1 | 17 | 2063 | ||
| AK094019.1 | 8 | 1582 | ||
| AK124436.1 | 12 | 4319 | ||
| AK292669.1 | ||||
| AK292889.1 | 24 | 3230 | ||
| AL137604.1 | 2 | 290 | CAB70837.1 | |
| AL359939.1 | 10 | 993 | CAB95772.1 | |
| BC030275.1 | 23 | 3138 | AAH30275.1 | |
| BC041868.1 | 20 | 3139 | AAH41868.1 | |
| CR749701.1 | 10 | 993 | CAH18479.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv521717 | Chr.2:63876998 - 63959448 on Build GRCh38 | Gain |
 VPS54
UGP2
|
| nsv582127 | Chr.2:63618350 - 64923736 on Build GRCh38 | Gain |
LOC647115
LOC101927438
MIR4434
LOC100507006
PELI1
UGP2
LINC00309
MIR4433A
SERTAD2
LOC339807
MIR4433B
LOC400958
VPS54
LOC105374768
AFTPH
LOC101927402
WDPCP
LGALSL
|
| nsv582126 | Chr.2:63346276 - 64470570 on Build GRCh38 | Gain |
LINC00309
MIR4433A
LOC647115
MDH1
MIR4433B
LOC100507006
VPS54
LOC105374768
PELI1
UGP2
WDPCP
LGALSL
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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