Hs01000055_cn

• Gene Symbol: B4GALNT4
• Assay Reference Genome Location: Chr.11:373504 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 338707
• Gene Name: beta-1,4-N-acetyl-galactosaminyltransferase 4
• Gene Aliases: -
• Location: Chr.11:369773-382117 on Build GRCh38
• Assay Gene Location: Overlaps Exon 8 - Intron 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
B4GALNT4	NM_178537.4			NP_848632.2
	XM_017017654.1			XP_016873143.1
	AB089939.1			BAD06471.1
	BC131528.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	PGGHG LMNTD2 LOC101059906 LOC143666 IFITM1 IFITM2 HRAS IRF7 RASSF7 MIR210 IFITM5 IFITM3 PTDSS2 PHRF1 RNH1 ANO9 LRRC56 B4GALNT4 MIR210HG SIGIRR CDHR5 PKP3
nsv552776	Chr.11:366710 - 432436 on Build GRCh38	Loss	ANO9 B4GALNT4 SIGIRR PKP3
esv28392	Chr.11:363975 - 403432 on Build GRCh38	Gain+Loss	B4GALNT4 PKP3
nsv951268	Chr.11:368601 - 503700 on Build GRCh38	Deletion	RNH1 ANO9 B4GALNT4 SIGIRR PKP3 PTDSS2
nsv552770	Chr.11:356090 - 444628 on Build GRCh38	Gain	ANO9 B4GALNT4 SIGIRR PKP3
dgv1505n54	Chr.11:198510 - 470331 on Build GRCh38	Gain	PGGHG RIC8A NLRP6 IFITM1 SIRT3 IFITM2 PSMD13 IFITM5 IFITM3 PTDSS2 ANO9 MIR6743 B4GALNT4 BET1L ODF3 SIGIRR PKP3
nsv1159790	Chr.11:340219 - 491334 on Build GRCh38	Deletion	ANO9 B4GALNT4 SIGIRR PKP3 PTDSS2
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	LMNTD2 PNPLA2 LOC101059906 EPS8L2 TMEM80 HRAS TSPAN4 RASSF7 POLR2L PTDSS2 SNORA52 PHRF1 RPLP2 PDDC1 CEND1 B4GALNT4 DRD4 LOC171391 SIGIRR CDHR5 PKP3 DEAF1 LOC143666 CHID1 IRF7 PIDD1 PANO1 MIR210 RNH1 ANO9 AP2A2 SLC25A22 CD151 LRRC56 CRACR2B TALDO1 SCT MIR210HG
dgv1507n54	Chr.11:368778 - 382912 on Build GRCh38	Loss	B4GALNT4

More Information

Additional Information:

For this assay, SNP(s) [rs73400533] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Function(s)

acetylgalactosaminyltransferase activity
N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity