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See other MSLN CNV Assays ›
Gene Symbol
MSLN
Assay Reference Genome
Location

Chr.16:762765 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01021740_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10232

Gene Name:

 mesothelin

Gene Aliases:

 MPF, SMRP

Location:

 Chr.16:760746-768865 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 4 - Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MSLN NM_001177355.2 NP_001170826.1
NM_005823.5 NP_005814.2
NM_013404.4 NP_037536.2
XM_005255034.4 XP_005255091.1
XM_011522348.2 XP_011520650.1
XM_017022853.1 XP_016878342.1
XM_017022854.1 XP_016878343.1
XM_017022855.1 XP_016878344.1
XM_017022856.1 XP_016878345.1
XM_017022857.1 XP_016878346.1
XM_017022858.1 XP_016878347.1
AL545401.3
AY743922.1 AAV87530.1
BC003512.1 AAH03512.1
BC009272.2 AAH09272.1
D49441.1 BAA08419.1
U40434.1 AAC50348.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv571025 Chr.16:760143 - 768092 on Build GRCh38 Gain MSLN
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain CHTF18 GNG13 MSLN PRR25 RPUSD1 MIR662
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication TBL3 NDUFB10 WDR24 CLCN7 LOC107984876 LINC00235 GNG13 ZNF598 METTL26 RPS2 MIR6859-4 NPW MIR3677 CAPN15 LOC105371038 NOXO1 HAGHL C1QTNF8 LOC652276 MEIOB RAB26 NME3 STUB1 HS3ST6 TPSG1 GFER HBZ RHOT2 SNORA78 NUBP2 PRR25 LMF1-AS1 MIR4717 DNASE1L2 EME2 LOC106660606 SNHG19 PIGQ IGFALS MIR3176 PRSS29P TMEM204 PDIA2 LOC100134368 MIR662 RNPS1 SNORD60 DDX11L10 HBA2 SNORA10 MLST8 JMJD8 MIR3180-5 MIR6511B1 MAPK8IP3 CEMP1 TELO2 WFIKKN1 HBM WDR90 SSTR5-AS1 RHBDL1 BAIAP3 MIR3178 ABCA17P E4F1 MIR6768 POLR3K RAB11FIP3 LOC100287175 TPSD1 NHLRC4 LOC105371047 NARFL RPL23AP5 SNORA64 MSLN MRPL28 CCNF SYNGR3 RPUSD1 TMEM8A LOC105371046 ERVK13-1 RAB40C LOC729652 PRR35 TSC2 MRPS34 SOX8 LOC105371049 MIR5587 RNF151 RHBDF1 CRAMP1 MSRB1 LOC101929280 FLJ42627 MCRIP2 LOC107987233 CHTF18 FAM234A NTHL1 TPSAB1 ARHGDIG AXIN1 GNPTG HAGH NME4 MPG WASIR2 AMDHD2 SSTR5 RGS11 LMF1 MIR3177 TPSB2 NPRL3 CACNA1H HBA1 NTN3 HBQ1 FBXL16 ECI1 MIR940 CASKIN1 HN1L LUC7L LOC105371184 CCDC154 UNKL MIR4516 ATP6V0C RPL3L BRICD5 SNHG9 PDPK1 PTX4 UBE2I PGP PKD1 TSR3 ABCA3 C16orf91 TBC1D24 DECR2 FAM173A MIR6767 SPSB3 LINC00254 CCDC78 IFT140 KCTD5 PRSS27 MIR1225 LOC105371045 TRAF7 C16orf59 SNRNP25 SLC9A3R2 FAHD1 METRN
nsv1702 Chr.16:751088 - 784288 on Build GRCh38 Insertion MSLN MIR662
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss RAB40C PRR35 LOC105371184 MIR5587 PIGQ MIR3176 WDR24 MIR662 LOC101929280 MCRIP2 LOC107987233 LINC00235 CHTF18 GNG13 METTL26 JMJD8 WFIKKN1 WDR90 RHBDL1 CAPN15 LOC105371038 FAM173A RAB11FIP3 LOC100287175 HAGHL CCDC78 NHLRC4 STUB1 NARFL RHOT2 MSLN PRR25 FBXL16 RPUSD1 METRN
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss RAB40C PRR35 LOC105371184 MIR5587 PIGQ MIR3176 WDR24 MIR662 LOC101929280 MCRIP2 LOC107987233 LINC00235 CHTF18 GNG13 METTL26 JMJD8 WFIKKN1 WDR90 RHBDL1 CAPN15 LOC105371038 FAM173A RAB11FIP3 LOC100287175 HAGHL CCDC78 NHLRC4 STUB1 NARFL RHOT2 MSLN PRR25 FBXL16 RPUSD1 METRN
nsv571023 Chr.16:750821 - 781496 on Build GRCh38 Loss MSLN MIR662
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion RAB40C PRR35 LOC105371184 SOX8 MIR5587 PIGQ MIR3176 WDR24 MIR662 LOC107984876 LOC101929280 MCRIP2 LOC107987233 LINC00235 CHTF18 GNG13 METTL26 JMJD8 WFIKKN1 WDR90 SSTR5-AS1 RHBDL1 CAPN15 LOC105371038 FAM173A RAB11FIP3 LOC100287175 HAGHL C1QTNF8 SSTR5 CCDC78 NHLRC4 STUB1 LMF1 NARFL RHOT2 MSLN PRR25 FBXL16 RPUSD1 LMF1-AS1 METRN
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication RAB40C LOC105371184 PIGQ WDR24 MIR662 LOC101929280 MCRIP2 CHTF18 GNG13 METTL26 JMJD8 WFIKKN1 WDR90 RHBDL1 LOC105371038 FAM173A LOC100287175 HAGHL CCDC78 STUB1 NARFL RHOT2 MSLN FBXL16 RPUSD1 METRN
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication RAB40C PRR35 LOC105371184 MIR5587 PIGQ MIR3176 WDR24 MIR662 LOC101929280 MCRIP2 LOC107987233 LINC00235 CHTF18 GNG13 METTL26 JMJD8 WFIKKN1 WDR90 RHBDL1 CAPN15 LOC105371038 FAM173A RAB11FIP3 LOC100287175 HAGHL CCDC78 NHLRC4 STUB1 NARFL RHOT2 MSLN PRR25 FBXL16 RPUSD1 METRN
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss LOC105371184 LOC105371038 FAM173A LOC100287175 HAGHL CCDC78 WDR24 STUB1 MIR662 NARFL MCRIP2 RHOT2 CHTF18 GNG13 MSLN JMJD8 FBXL16 RPUSD1 METRN WDR90 RHBDL1
dgv4827n54 Chr.16:760039 - 810673 on Build GRCh38 Loss CHTF18 GNG13 MSLN PRR25 RPUSD1 MIR662
dgv772e212 Chr.16:749297 - 780622 on Build GRCh38 Loss MSLN MIR662

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

cell adhesion molecule

Gene Ontology Categories:

Function(s) Process(es)


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