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See other LPCAT4 CNV Assays ›
Gene Symbol
LPCAT4
Assay Reference Genome
Location

Chr.15:34359055 on build GRCh38
Cytoband
15q14
Assay ID Hs01021892_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 254531

Gene Name:

 lysophosphatidylcholine acyltransferase 4

Gene Aliases:

 AGPAT7, AYTL3, LPAAT-eta, LPEAT2

Location:

 Chr.15:34358888-34367196 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LPCAT4 NM_153613.2 14 1741 NP_705841.2
XM_011521422.1 14 1736 XP_011519724.1
AF007155.1 5 1224 AAC19156.1
AF529233.1 14 1590 AAP97722.1
AF542964.1 14 1824 AAN33178.1
AK290273.1 14 1712
AL832237.1 14 1738
AY734233.1 14 1761 AAU34184.1
BC024892.2 7 900 AAH24892.2
BC092463.1 14 1738 AAH92463.1
T29943.1 1 143

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv517751 Chr.15:34355367 - 34579095 on Build GRCh38 Gain+Loss GOLGA8B GOLGA8A MIR1233-2 LPCAT4 MIR1233-1 NUTM1
nsv471682 Chr.15:34268250 - 34590429 on Build GRCh38 Gain+Loss GOLGA8B GOLGA8A MIR1233-2 LPCAT4 MIR1233-1 SLC12A6 NOP10 NUTM1
nsv1052620 Chr.15:32612402 - 34538731 on Build GRCh38 Gain SCG5 GOLGA8B GOLGA8A MIR1233-2 KATNBL1 FMN1 LPCAT4 PGBD4 LOC100131315 SLC12A6 GREM1 RYR3 NOP10 EMC4 LOC101928042 AVEN LOC105370757 LOC101928134 ARHGAP11A CHRM5 MIR1233-1 TMCO5B EMC7 NUTM1
esv33337 Chr.15:31689863 - 34575097 on Build GRCh38 Gain+Loss MIR1233-2 LPCAT4 LOC100996255 LOC100131315 NOP10 LOC100653133 ARHGAP11A GOLGA8K CHRM5 ULK4P1 TMCO5B WHAMMP1 SCG5 GOLGA8B GOLGA8A KATNBL1 FMN1 PGBD4 SLC12A6 GREM1 RYR3 EMC4 LOC101060588 LOC101928042 AVEN LOC105370757 LOC101928134 LOC105370940 CHRNA7 MIR1233-1 GOLGA8N GOLGA8O EMC7 NUTM1
nsv509567 Chr.15:34345031 - 34396055 on Build GRCh38 Insertion GOLGA8A LPCAT4 MIR1233-1 NUTM1
nsv1485 Chr.15:34354006 - 34601539 on Build GRCh38 Deletion GOLGA8B GOLGA8A MIR1233-2 LPCAT4 MIR1233-1 NUTM1
esv2760024 Chr.15:34250820 - 34696046 on Build GRCh38 Gain+Loss GOLGA8B GOLGA8A MIR1233-2 LPCAT4 MIR1233-1 SLC12A6 NOP10 NUTM1
esv3569431 Chr.15:33564570 - 35080307 on Build GRCh38 Gain GOLGA8B GOLGA8A MIR1233-2 KATNBL1 LPCAT4 PGBD4 SLC12A6 RYR3 NOP10 ZNF770 EMC4 ACTC1 AVEN CHRM5 MIR1233-1 AQR GJD2 LOC101928174 EMC7 NUTM1
nsv469547 Chr.15:34302356 - 34465606 on Build GRCh38 Loss GOLGA8A LPCAT4 MIR1233-1 SLC12A6 NOP10 NUTM1
dgv4456n54 Chr.15:32604149 - 34557061 on Build GRCh38 Gain MIR1233-2 LPCAT4 LOC100131315 NOP10 ARHGAP11A CHRM5 TMCO5B SCG5 GOLGA8B GOLGA8A KATNBL1 FMN1 PGBD4 SLC12A6 GREM1 RYR3 EMC4 LOC101928042 AVEN LOC105370757 LOC101928134 MIR1233-1 GOLGA8N EMC7 NUTM1

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More Information


Additional Information:

For this assay, SNP(s) [rs201560543] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Function(s) Process(es)


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