Hs01047048_cn

• Gene Symbol: NFATC2IP
• Assay Reference Genome Location: Chr.16:28964100 on build GRCh38
• Cytoband: 16p11.2

Target Gene Details

• Entrez Gene ID: 84901
• Gene Name: nuclear factor of activated T-cells 2 interacting protein
• Gene Aliases: ESC2, NIP45, RAD60
• Location: Chr.16:28950988-28967097 on Build GRCh38
• Assay Gene Location: Within Exon 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NFATC2IP	NM_032815.3	8	1512	NP_116204.3
	AF458593.1	8	1522	AAM49721.1
	AK027545.1	5	927	BAB55189.1
	AK074761.1	8	1502	BAC11189.1
	AK094764.1	1	1412
	AK297333.1	3	857
	AK304606.1	3	779
	AK316535.1
	BC018311.1	6	1016
	BC021551.1	5	895
	BC068007.1	5	752	AAH68007.1
	BC080628.1	8	1179	AAH80628.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv4987n54	Chr.16:28824884 - 29032129 on Build GRCh38	Gain	LAT MIR4517 RABEP2 TUFM SPNS1 CD19 ATP2A1-AS1 ATP2A1 NFATC2IP SH2B1 ATXN2L MIR4721
esv3892826	Chr.16:28814728 - 29032129 on Build GRCh38	Gain+Loss	LAT MIR4517 RABEP2 TUFM SPNS1 CD19 ATP2A1-AS1 ATP2A1 NFATC2IP SH2B1 ATXN2L MIR4721
esv2758640	Chr.16:28163817 - 29139232 on Build GRCh38	Gain+Loss	SGF29 MIR6862-2 ATP2A1-AS1 APOBR ATP2A1 MIR6862-1 RRN3P2 SH2B1 ATXN2L XPO6 LAT SULT1A1 RABEP2 MIR4721 NPIPB8 MIR4517 TUFM NUPR1 LOC101928215 SULT1A2 SPNS1 CD19 NPIP CLN3 NPIPB9 EIF3CL NFATC2IP NPIPB6 IL27 EIF3C SBK1
nsv518648	Chr.16:28826194 - 29032129 on Build GRCh38	Loss	LAT MIR4517 RABEP2 TUFM SPNS1 CD19 ATP2A1-AS1 ATP2A1 NFATC2IP SH2B1 ATXN2L MIR4721
esv33811	Chr.16:28963694 - 28973828 on Build GRCh38	Loss	NFATC2IP
nsv1059555	Chr.16:28373144 - 29195838 on Build GRCh38	Gain	SGF29 MIR6862-2 ATP2A1-AS1 APOBR ATP2A1 MIR6862-1 RRN3P2 SH2B1 ATXN2L LAT SULT1A1 RABEP2 MIR4721 NPIPB8 MIR4517 TUFM LOC107984832 NUPR1 LOC101928215 SULT1A2 SPNS1 CD19 NPIP CLN3 NPIPB9 EIF3CL NFATC2IP IL27 EIF3C
dgv2831n100	Chr.16:28812594 - 29032542 on Build GRCh38	Gain	LAT MIR4517 RABEP2 TUFM SPNS1 CD19 ATP2A1-AS1 ATP2A1 NFATC2IP SH2B1 ATXN2L MIR4721
esv3570454	Chr.16:28799004 - 29032129 on Build GRCh38	Gain	LAT MIR4517 RABEP2 TUFM SPNS1 CD19 ATP2A1-AS1 ATP2A1 NFATC2IP SH2B1 ATXN2L MIR4721
nsv457480	Chr.16:28958159 - 29032129 on Build GRCh38	Gain	LAT MIR4517 SPNS1 NFATC2IP
nsv571805	Chr.16:28824174 - 29032129 on Build GRCh38	Loss	LAT MIR4517 RABEP2 TUFM SPNS1 CD19 ATP2A1-AS1 ATP2A1 NFATC2IP SH2B1 ATXN2L MIR4721
dgv2830n100	Chr.16:28620264 - 29032542 on Build GRCh38	Gain	MIR4517 TUFM MIR6862-2 ATP2A1-AS1 ATP2A1 SH2B1 ATXN2L LAT SULT1A1 RABEP2 SPNS1 CD19 NPIPB9 NFATC2IP EIF3C MIR4721 NPIPB8

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cytokine production
protein sumoylation
positive regulation of transcription from RNA polymerase II promoter

Function(s)

protein tag