Hs01050625_cn

• Gene Symbol: APOBR
• Assay Reference Genome Location: Chr.16:28496833 on build GRCh38
• Cytoband: 16p12.1

Target Gene Details

• Entrez Gene ID: 55911
• Gene Name: apolipoprotein B receptor
• Gene Aliases: APOB100R, APOB48R
• Location: Chr.16:28494649-28498970 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
APOBR	NM_018690.3	2	1825	NP_061160.3
	AF141332.1	3	1775	AAF76255.1
	AF141334.1	3	1775	AAF78765.1
	BC119786.1	3	1775
	BC119788.1	3	1570

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv509608	Chr.16:28449797 - 28632895 on Build GRCh38	Insertion	NUPR1 SULT1A1 SGF29 APOBR IL27 SULT1A2 CLN3
esv2758640	Chr.16:28163817 - 29139232 on Build GRCh38	Gain+Loss	LAT NFATC2IP RABEP2 SH2B1 EIF3CL SBK1 MIR6862-2 MIR4517 RRN3P2 LOC101928215 XPO6 EIF3C ATP2A1 NPIPB9 MIR4721 ATP2A1-AS1 SULT1A2 CLN3 SULT1A1 CD19 NPIP SPNS1 IL27 MIR6862-1 NUPR1 NPIPB6 ATXN2L SGF29 APOBR NPIPB8 TUFM
nsv1059555	Chr.16:28373144 - 29195838 on Build GRCh38	Gain	LAT NFATC2IP RABEP2 SH2B1 EIF3CL MIR6862-2 MIR4517 RRN3P2 LOC101928215 LOC107984832 EIF3C ATP2A1 NPIPB9 MIR4721 ATP2A1-AS1 SULT1A2 CLN3 SULT1A1 CD19 NPIP SPNS1 IL27 MIR6862-1 NUPR1 ATXN2L SGF29 APOBR NPIPB8 TUFM
nsv833180	Chr.16:28346157 - 28574165 on Build GRCh38	Loss	NUPR1 NPIPB6 SGF29 APOBR EIF3CL IL27 MIR6862-1 CLN3
nsv9415	Chr.16:28468881 - 28498959 on Build GRCh38	Gain	APOBR CLN3

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

triglyceride metabolic process
lipid transport
receptor-mediated endocytosis
cholesterol metabolic process

Function(s)

very-low-density lipoprotein particle receptor activity