Hs01051677_cn

• Gene Symbol: CCDC88B
• Assay Reference Genome Location: Chr.11:64344493 on build GRCh38
• Cytoband: 11q13.1

Target Gene Details

• Entrez Gene ID: 283234
• Gene Name: coiled-coil domain containing 88B
• Gene Aliases: BRLZ, CCDC88, HKRP3, gipie
• Location: Chr.11:64340203-64357534 on Build GRCh38
• Assay Gene Location: Within Exon 14

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CCDC88B	NM_032251.5	14	2001	NP_115627.6
	XM_006718519.3	14	2013	XP_006718582.1
	XM_011544957.2	14	2014	XP_011543259.1
	XM_011544959.2	14	2014	XP_011543261.1
	XM_011544960.2	14	2013	XP_011543262.1
	XM_017017601.1	14	2015	XP_016873090.1
	AK074126.1	8	1434	BAB84952.1
	AK090436.1	14	1996	BAC03417.1
	AK095289.1	5	972
	BC140822.1	14	1990
	BC140824.1	14	1990
	BC141866.1	14	1980

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv555193	Chr.11:64339671 - 64353102 on Build GRCh38	Loss	CCDC88B MIR7155
nsv951010	Chr.11:63942829 - 64352128 on Build GRCh38	Deletion	DNAJC4 STIP1 ESRRA MIR7155 LOC105369340 GPR137 KCNK4 FERMT3 PLCB3 PPP1R14B NUDT22 TEX40 FLRT1 FKBP2 PRDX5 KCNK4-TEX40 COX8A TRPT1 VEGFB MACROD1 CCDC88B OTUB1 TRMT112 NAA40 BAD
nsv358	Chr.11:64325464 - 64359765 on Build GRCh38	Insertion	CCDC88B MIR7155 RPS6KA4
nsv832186	Chr.11:64204788 - 64402587 on Build GRCh38	Loss	KCNK4-TEX40 DNAJC4 TRPT1 VEGFB ESRRA MIR7155 LOC105369340 GPR137 KCNK4 FERMT3 PLCB3 RPS6KA4 PPP1R14B CCDC88B NUDT22 TRMT112 TEX40 FKBP2 BAD PRDX5 MIR1237
dgv13n64	Chr.11:64329761 - 64362250 on Build GRCh38	Loss	CCDC88B MIR7155 RPS6KA4

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

membrane traffic protein

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of T cell proliferation
positive regulation of T cell activation