Hs01116908_cn

• Gene Symbol: BAIAP3
• Assay Reference Genome Location: Chr.16:1341834 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 8938
• Gene Name: BAI1 associated protein 3
• Gene Aliases: BAP3
• Location: Chr.16:1333605-1349441 on Build GRCh38
• Assay Gene Location: Overlaps Intron 10 - Intron 11

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
BAIAP3	NM_001199096.1			NP_001186025.1
	NM_001199097.1			NP_001186026.1
	NM_001199098.1			NP_001186027.1
	NM_001199099.1			NP_001186028.1
	NM_001286464.1			NP_001273393.1
	NM_003933.4			NP_003924.2
	XM_011522728.1			XP_011521030.1
	XM_011522729.1			XP_011521031.1
	XM_011522730.2			XP_011521032.1
	AB018277.2
	AK294491.1
	AK294744.1
	AK295645.1
	AK299309.1
	AK299358.1
	AK315059.1
	AL834321.1			CAH56376.1
	BC104966.1			AAI04967.1
	BC112129.1			AAI12130.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2762143	Chr.16:1270592 - 1519404 on Build GRCh38	Gain	CCDC154 TELO2 BAIAP3 UNKL IFT140 TSR3 PTX4 GNPTG LOC105371045 C16orf91 UBE2I CLCN7
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	RAB11FIP3 NTHL1 HBA2 NOXO1 PDIA2 TMEM8A MIR6767 SSTR5 RAB40C BAIAP3 ECI1 SNORA78 UNKL TSR3 NDUFB10 SYNGR3 PGP LOC652276 PRSS27 CLCN7 HBZ HBM MIR5587 LOC107984876 FAM173A NTN3 LOC105371038 MIR1225 CEMP1 RNF151 PRR25 IGFALS LINC00235 MIR662 GFER HN1L CRAMP1 DECR2 EME2 ERVK13-1 SOX8 NME3 RPL3L KCTD5 SNHG19 NPRL3 LOC101929280 LINC00254 LMF1-AS1 MAPK8IP3 CAPN15 MIR940 MIR3177 ABCA3 MIR4717 C16orf59 CCNF HBQ1 NUBP2 HS3ST6 FLJ42627 LOC105371047 TMEM204 LUC7L LMF1 TPSB2 PRSS29P ARHGDIG LOC100134368 METRN NME4 MLST8 RPS2 LOC105371046 WASIR2 TPSG1 TPSD1 ATP6V0C TRAF7 GNG13 PTX4 LOC100287175 FAHD1 CCDC154 MIR6768 DNASE1L2 IFT140 MIR4516 MIR3677 ABCA17P SSTR5-AS1 PRR35 MIR3178 MIR6859-4 PIGQ WDR24 MIR3176 SNRNP25 NPW RNPS1 NHLRC4 SNORD60 TBL3 MIR6511B1 METTL26 PKD1 E4F1 TBC1D24 GNPTG WDR90 LOC729652 POLR3K LOC107987233 BRICD5 C1QTNF8 FBXL16 RGS11 LOC106660606 JMJD8 AMDHD2 C16orf91 UBE2I WFIKKN1 SPSB3 CACNA1H HBA1 FAM234A LOC105371049 RAB26 MSLN AXIN1 MCRIP2 STUB1 SLC9A3R2 CCDC78 RHBDL1 MRPS34 DDX11L10 TELO2 SNORA64 NARFL RHOT2 MSRB1 SNHG9 ZNF598 CHTF18 MPG RPL23AP5 CASKIN1 MEIOB PDPK1 RPUSD1 MIR3180-5 RHBDF1 LOC105371184 MRPL28 LOC105371045 SNORA10 TPSAB1 TSC2 HAGHL HAGH
nsv974746	Chr.16:1328043 - 1351866 on Build GRCh38	Duplication	BAIAP3 TSR3
nsv471066	Chr.16:893361 - 1482836 on Build GRCh38	Loss	CCDC154 CACNA1H LOC107984876 SSTR5-AS1 LMF1 TPSB2 PRSS29P LMF1-AS1 C1QTNF8 SSTR5 TPSG1 TPSD1 BAIAP3 UNKL TSR3 GNPTG LOC105371045 TPSAB1 C16orf91 SOX8 UBE2I CLCN7
esv3637613	Chr.16:1341466 - 1345103 on Build GRCh38	Loss	BAIAP3
dgv2692n100	Chr.16:1002943 - 1394728 on Build GRCh38	Gain	CACNA1H SSTR5-AS1 TPSB2 PRSS29P C1QTNF8 SSTR5 TPSG1 TPSD1 BAIAP3 UNKL TSR3 GNPTG TPSAB1 UBE2I
nsv428316	Chr.16:929650 - 1363252 on Build GRCh38	Gain+Loss	CACNA1H SSTR5-AS1 LMF1 TPSB2 PRSS29P LMF1-AS1 C1QTNF8 SSTR5 TPSG1 TPSD1 BAIAP3 UNKL TSR3 GNPTG TPSAB1 SOX8 UBE2I
nsv952899	Chr.16:1142501 - 1535899 on Build GRCh38	Deletion	CCDC154 TELO2 CACNA1H IFT140 LOC105371047 TMEM204 TPSB2 PRSS29P TPSG1 TPSD1 BAIAP3 UNKL TSR3 PTX4 GNPTG LOC105371045 TPSAB1 C16orf91 UBE2I CLCN7
nsv1046314	Chr.16:1238517 - 1426464 on Build GRCh38	Loss	TPSD1 BAIAP3 UNKL TSR3 GNPTG PRSS29P TPSAB1 C16orf91 UBE2I

More Information

Additional Information:

For this assay, SNP(s) [rs112493599] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

G-protein coupled receptor signaling pathway
neurotransmitter secretion

Function(s)

protein C-terminus binding