Hs01118165_cn

• Gene Symbol: GATS
• Assay Reference Genome Location: Chr.7:100201142 on build GRCh38
• Cytoband: 7q22.1

Target Gene Details

• Entrez Gene ID: 352954
• Gene Name: GATS, stromal antigen 3 opposite strand
• Gene Aliases: STAG3OS
• Location: Chr.7:100187988-100272274 on Build GRCh38
• Assay Gene Location: Within Exon 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
GATS	NM_178831.6	5	2251	NP_849153.3
	NR_028039.1	8	3063
	NR_028040.1	6	2375
	XM_017012154.1	6	2277	XP_016867643.1
	XM_017012155.1	6	2253	XP_016867644.1
	XM_017012156.1			XP_016867645.1
	XM_017012157.1	5	2166	XP_016867646.1
	AK056608.1	5	1757
	AK095056.1	4	1765
	BC033723.1	5	2244	AAH33723.1
	BC065200.1	7	2380	AAH65200.1
	BC090867.1	8	3038	AAH90867.1
	CR749506.1	6	2126	CAH18327.1

Target Gene Details

• Entrez Gene ID: 10734
• Gene Name: stromal antigen 3
• Gene Aliases: -
• Location: Chr.7:100177563-100219334 on Build GRCh38
• Assay Gene Location: Overlaps Intron 19 - Intron 20

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
STAG3	NM_001282716.1			NP_001269645.1
	NM_001282717.1			NP_001269646.1
	NM_001282718.1			NP_001269647.1
	NM_012447.3			NP_036579.2
	XM_011515742.1			XP_011514044.1
	XM_017011683.1			XP_016867172.1
	XM_017011684.1			XP_016867173.1
	XM_017011685.1			XP_016867174.1
	XM_017011686.1			XP_016867175.1
	XM_017011687.1			XP_016867176.1
	AJ007798.2			CAB59367.1
	AK292394.1
	AK302587.1
	AK302693.1
	AL833816.1			CAD38679.2
	BC140932.1
	BC146806.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv5867	Chr.7:100169151 - 100202132 on Build GRCh38	Deletion	GATS STAG3 GPC2
esv2734888	Chr.7:99975623 - 101290285 on Build GRCh38	Deletion	ACHE NYAP1 AZGP1 SERPINE1 SAP25 FIS1 SLC12A9 MUC3A PVRIG2P MCM7 PPP1R35 SPDYE3 MEPCE PCOLCE PVRIG ZKSCAN1 STAG3 TFR2 GIGYF1 MIR93 ZAN NAT16 MIR4653 FBXO24 AP4M1 ACTL6B AGFG2 MIR4658 PILRB ZNF3 TSC22D4 MIR106B UFSP1 EPO AZGP1P1 TRIM56 POP7 MUC12 PLOD3 ZSCAN21 MUC17 PMS2P1 MBLAC1 TAF6 MIR6875 MOSPD3 COPS6 TRIP6 C7orf43 SRRT PILRA LOC105375429 MOGAT3 STAG3L5P-PVRIG2P-PILRB STAG3L5P LRCH4 CNPY4 LOC102724094 MIR25 AP1S1 EPHB4 PCOLCE-AS1 CLDN15 VGF GATS GNB2 ZASP ZCWPW1 MIR6840 C7orf61 LAMTOR4 GPC2 ZNHIT1 GAL3ST4
nsv428180	Chr.7:100153358 - 100363277 on Build GRCh38	Gain	STAG3L5P-PVRIG2P-PILRB STAG3L5P PVRIG2P MIR4658 PMS2P1 GATS MIR6840 SPDYE3 LAMTOR4 PILRB PVRIG STAG3 C7orf43 GPC2 GAL3ST4

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

chromatin/chromatin-binding, or -regulatory protein

Gene Ontology Categories:

Process(es)

synaptonemal complex assembly